Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00218
(775 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_54525| Best HMM Match : Ery_res_leader1 (HMM E-Value=5.4) 32 0.59
SB_8646| Best HMM Match : 7tm_1 (HMM E-Value=1.2e-27) 30 1.8
SB_34603| Best HMM Match : DUF1211 (HMM E-Value=3.3) 29 3.2
SB_18244| Best HMM Match : Fukutin-related (HMM E-Value=3.7) 29 4.2
SB_35372| Best HMM Match : SpoIIIAC (HMM E-Value=1.3) 29 5.5
SB_45116| Best HMM Match : EGF (HMM E-Value=0) 29 5.5
SB_36244| Best HMM Match : 7tm_2 (HMM E-Value=1.2e-12) 28 7.3
SB_8645| Best HMM Match : 7tm_1 (HMM E-Value=0) 28 7.3
SB_33864| Best HMM Match : WD40 (HMM E-Value=2.1) 28 9.6
SB_18934| Best HMM Match : WD40 (HMM E-Value=0.00016) 28 9.6
>SB_54525| Best HMM Match : Ery_res_leader1 (HMM E-Value=5.4)
Length = 157
Score = 31.9 bits (69), Expect = 0.59
Identities = 17/69 (24%), Positives = 35/69 (50%)
Frame = -3
Query: 320 MPNVMIIGCVLKR*KRNKQTNSFRVIYID*YGYLQYMSEYVLYLNHGSRASGHFYYVVCY 141
+PN+ + V+K + T+ Y+ Y +Q++S +LY H + A F Y+
Sbjct: 71 IPNIECVPKVIKEGRCALVTSFACFKYMAMYSIVQFVSVLILYSIHSNLADFQFLYIDLV 130
Query: 140 IVCNLTLLN 114
++ +L L++
Sbjct: 131 VITSLALVS 139
>SB_8646| Best HMM Match : 7tm_1 (HMM E-Value=1.2e-27)
Length = 522
Score = 30.3 bits (65), Expect = 1.8
Identities = 12/16 (75%), Positives = 14/16 (87%)
Frame = +1
Query: 511 CDFLSPSISIPFYFAL 558
CDFL+P +SIPF FAL
Sbjct: 15 CDFLTPLLSIPFDFAL 30
>SB_34603| Best HMM Match : DUF1211 (HMM E-Value=3.3)
Length = 143
Score = 29.5 bits (63), Expect = 3.2
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = -3
Query: 227 GYLQYMSEYVLYLNHGSRASGHFYYVVCYIVCNLTL 120
GYL + + +N G + G F + VC IV NL L
Sbjct: 12 GYLMFQGDLFGSINVGIWSFGTFVFAVCVIVSNLKL 47
>SB_18244| Best HMM Match : Fukutin-related (HMM E-Value=3.7)
Length = 540
Score = 29.1 bits (62), Expect = 4.2
Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Frame = -3
Query: 224 YLQYMSEYVLYLN--HGSRASGHFYYVVCYIVCNLTLLNLYLTDFFYYTVRYNVSKLMKT 51
Y YM+ Y +Y+ H H Y ++ +T ++Y+T + Y RY+++ L +T
Sbjct: 228 YHVYMTRYHVYMTRYHVYMTRYHVYMTRYHVY--MTRYHVYMTRYHVYMTRYHLNLLFRT 285
Score = 28.7 bits (61), Expect = 5.5
Identities = 13/52 (25%), Positives = 25/52 (48%)
Frame = -3
Query: 224 YLQYMSEYVLYLNHGSRASGHFYYVVCYIVCNLTLLNLYLTDFFYYTVRYNV 69
Y YM+ Y +Y+ H ++ + +T ++Y+T + Y RY+V
Sbjct: 18 YHVYMTHYHVYMTHYHVYMTRYHVYMTRYHVYMTRYHVYMTRYHVYMTRYHV 69
>SB_35372| Best HMM Match : SpoIIIAC (HMM E-Value=1.3)
Length = 378
Score = 28.7 bits (61), Expect = 5.5
Identities = 13/52 (25%), Positives = 25/52 (48%)
Frame = -3
Query: 224 YLQYMSEYVLYLNHGSRASGHFYYVVCYIVCNLTLLNLYLTDFFYYTVRYNV 69
Y YM+ Y +Y+ H ++ + +T ++Y+T + Y RY+V
Sbjct: 18 YHVYMTHYHVYMTHYHVYMTRYHVYMTRYHVYMTRYHVYMTRYHVYMTRYHV 69
>SB_45116| Best HMM Match : EGF (HMM E-Value=0)
Length = 2023
Score = 28.7 bits (61), Expect = 5.5
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = -2
Query: 258 LISRYIH*LVWIFTIHVGVCPVSEPWISRFRSFLLCCMLH 139
L+S + +W+F H + P SE + F +FL C + H
Sbjct: 843 LVSNGKNYFLWLFDSHGDIFPASESTLIYFVTFLACRVKH 882
>SB_36244| Best HMM Match : 7tm_2 (HMM E-Value=1.2e-12)
Length = 849
Score = 28.3 bits (60), Expect = 7.3
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
Frame = -3
Query: 161 FYYVVCYIVCNLTLLNLYLTDFFYYTVRYN----VSKLMKTTPIPQY 33
F V C+ +TL++ YLT + T YN V+ + TP+P++
Sbjct: 781 FALVYCFGNATVTLVSRYLTLYLLVTALYNGIAGVTVTVAVTPLPRF 827
>SB_8645| Best HMM Match : 7tm_1 (HMM E-Value=0)
Length = 432
Score = 28.3 bits (60), Expect = 7.3
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = +1
Query: 511 CDFLSPSISIPFYFAL 558
CD L+P +SIPF FAL
Sbjct: 78 CDLLTPLVSIPFDFAL 93
>SB_33864| Best HMM Match : WD40 (HMM E-Value=2.1)
Length = 397
Score = 27.9 bits (59), Expect = 9.6
Identities = 9/26 (34%), Positives = 17/26 (65%)
Frame = +2
Query: 167 LKREIHGSDTGHTPTCIVNIHTNQCI 244
++R++ SD +VN+HTN+C+
Sbjct: 116 IERDLEKSDAFKYSNVVVNLHTNRCV 141
>SB_18934| Best HMM Match : WD40 (HMM E-Value=0.00016)
Length = 206
Score = 27.9 bits (59), Expect = 9.6
Identities = 9/26 (34%), Positives = 17/26 (65%)
Frame = +2
Query: 167 LKREIHGSDTGHTPTCIVNIHTNQCI 244
++R++ SD +VN+HTN+C+
Sbjct: 151 IERDLEKSDAFKYSNVVVNLHTNRCV 176
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,266,666
Number of Sequences: 59808
Number of extensions: 448101
Number of successful extensions: 1138
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 958
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1119
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2107953584
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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