Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00218
         (775 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U50300-8|AAC48105.1|  646|Caenorhabditis elegans Hypothetical pr...    30   2.1  
Z93395-6|CAB07708.1| 3375|Caenorhabditis elegans Hypothetical pr...    29   4.9  
Z93375-8|CAB07569.1| 3375|Caenorhabditis elegans Hypothetical pr...    29   4.9  
Z81142-4|CAB03506.1|  338|Caenorhabditis elegans Hypothetical pr...    29   4.9  
AF132883-1|AAD25092.1|  925|Caenorhabditis elegans UNC-52/Perlec...    29   4.9  
AL031632-1|CAA21004.1|  248|Caenorhabditis elegans Hypothetical ...    28   8.5  

>U50300-8|AAC48105.1|  646|Caenorhabditis elegans Hypothetical
           protein R03H4.6 protein.
          Length = 646

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 15/38 (39%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
 Frame = -3

Query: 158 YYVVCYIVCNLTLLNLYLTDFFYYT-VRYNVSKLMKTT 48
           YY+V ++   L  ++LYL DF++YT  RY+++ L   T
Sbjct: 74  YYLVIFVT--LAAVHLYLGDFWWYTNRRYSLASLFLVT 109


>Z93395-6|CAB07708.1| 3375|Caenorhabditis elegans Hypothetical protein
            ZC101.2e protein.
          Length = 3375

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 16/50 (32%), Positives = 26/50 (52%)
 Frame = +3

Query: 294  ATNYHYIRHMCKVTEKGTVIYHLEKKY*WRHG*KLVIKYS*SNSDNWNEV 443
            AT Y  I H  K+T+ GTV+Y  +      +G ++V   +  N + WN +
Sbjct: 2584 ATPYDTIHHEAKITDYGTVLYEFD----IGNGRQIVETTNPINPNEWNVI 2629


>Z93375-8|CAB07569.1| 3375|Caenorhabditis elegans Hypothetical protein
            ZC101.2e protein.
          Length = 3375

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 16/50 (32%), Positives = 26/50 (52%)
 Frame = +3

Query: 294  ATNYHYIRHMCKVTEKGTVIYHLEKKY*WRHG*KLVIKYS*SNSDNWNEV 443
            AT Y  I H  K+T+ GTV+Y  +      +G ++V   +  N + WN +
Sbjct: 2584 ATPYDTIHHEAKITDYGTVLYEFD----IGNGRQIVETTNPINPNEWNVI 2629


>Z81142-4|CAB03506.1|  338|Caenorhabditis elegans Hypothetical
           protein ZK1037.7 protein.
          Length = 338

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +2

Query: 119 VVLNCRRCNIQHNKNDLKREIHGSDTGHTPTCIV 220
           V+L  R C I+ N++ LK     S+  HT T +V
Sbjct: 221 VILVIRICKIRKNRSHLKSRRDNSERDHTSTLVV 254


>AF132883-1|AAD25092.1|  925|Caenorhabditis elegans UNC-52/Perlecan
           protein.
          Length = 925

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 16/50 (32%), Positives = 26/50 (52%)
 Frame = +3

Query: 294 ATNYHYIRHMCKVTEKGTVIYHLEKKY*WRHG*KLVIKYS*SNSDNWNEV 443
           AT Y  I H  K+T+ GTV+Y  +      +G ++V   +  N + WN +
Sbjct: 134 ATPYDTIHHEAKITDYGTVLYEFD----IGNGRQIVETTNPINPNEWNVI 179


>AL031632-1|CAA21004.1|  248|Caenorhabditis elegans Hypothetical
           protein Y32B12B.1 protein.
          Length = 248

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = -3

Query: 734 QQKNSFHNNYMIIYFWRKISHKRF*ICNNEISNLILRVHIQSAV 603
           + + SF N++  ++  +  + K F  CN  ISNLI     QS V
Sbjct: 65  KNRTSFSNSFSSLFPAKTTATKTFFFCNLVISNLIAMPVYQSVV 108


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,996,149
Number of Sequences: 27780
Number of extensions: 357873
Number of successful extensions: 759
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 742
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 759
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1861650246
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)