Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00217
         (531 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1322.11 |rpl2302|rpl23-2|60S ribosomal protein L23|Schizosac...   132   3e-32
SPAC3G9.03 |rpl2301|rpl23-1|60S ribosomal protein L23|Schizosacc...   132   3e-32
SPBC887.07 |mrpl38||mitochondrial ribosomal protein subunit L38|...    28   0.76 
SPBC16C6.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   7.0  
SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase Ub...    25   9.3  
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo...    25   9.3  

>SPCC1322.11 |rpl2302|rpl23-2|60S ribosomal protein
           L23|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 139

 Score =  132 bits (319), Expect = 3e-32
 Identities = 59/87 (67%), Positives = 76/87 (87%), Gaps = 1/87 (1%)
 Frame = +2

Query: 8   GRKFRISLGLPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVATVKKGKP 187
           G K+R++LGLPV A++NCADN+GAKNLY+++V G   RLNRLPAA  GDM++ATVKKGKP
Sbjct: 10  GTKYRMTLGLPVQAIMNCADNSGAKNLYIVSVFGTGARLNRLPAASCGDMVLATVKKGKP 69

Query: 188 ELRKKVMPAVVIRQRKPFRRRD-EYLY 265
           +LRKK+MPA+V+RQRK +RR+D  YLY
Sbjct: 70  DLRKKIMPAIVVRQRKAWRRKDGVYLY 96



 Score = 81.0 bits (191), Expect = 1e-16
 Identities = 35/38 (92%), Positives = 37/38 (97%)
 Frame = +1

Query: 256 VFIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 369
           V++YFEDNAGVIVN KGEMKGSAITGPVAKECADLWPR
Sbjct: 93  VYLYFEDNAGVIVNPKGEMKGSAITGPVAKECADLWPR 130


>SPAC3G9.03 |rpl2301|rpl23-1|60S ribosomal protein
           L23|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 139

 Score =  132 bits (319), Expect = 3e-32
 Identities = 59/87 (67%), Positives = 76/87 (87%), Gaps = 1/87 (1%)
 Frame = +2

Query: 8   GRKFRISLGLPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVATVKKGKP 187
           G K+R++LGLPV A++NCADN+GAKNLY+++V G   RLNRLPAA  GDM++ATVKKGKP
Sbjct: 10  GTKYRMTLGLPVQAIMNCADNSGAKNLYIVSVFGTGARLNRLPAASCGDMVLATVKKGKP 69

Query: 188 ELRKKVMPAVVIRQRKPFRRRD-EYLY 265
           +LRKK+MPA+V+RQRK +RR+D  YLY
Sbjct: 70  DLRKKIMPAIVVRQRKAWRRKDGVYLY 96



 Score = 81.0 bits (191), Expect = 1e-16
 Identities = 35/38 (92%), Positives = 37/38 (97%)
 Frame = +1

Query: 256 VFIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 369
           V++YFEDNAGVIVN KGEMKGSAITGPVAKECADLWPR
Sbjct: 93  VYLYFEDNAGVIVNPKGEMKGSAITGPVAKECADLWPR 130


>SPBC887.07 |mrpl38||mitochondrial ribosomal protein subunit
           L38|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 126

 Score = 28.3 bits (60), Expect = 0.76
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +1

Query: 259 FIYFEDNAGVIVNNKGEMKGSAITGPVAKE 348
           ++ F+DNA V+VN + E  G+ I   VA E
Sbjct: 80  YVRFDDNACVLVNKECEPLGTRILSVVANE 109


>SPBC16C6.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 350

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 11/27 (40%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = +2

Query: 440 PSTSKSNPK-NYNLRNRHLQCKCASLN 517
           P+T+ SN   N+ +RNR    +C+SL+
Sbjct: 11  PTTATSNSSLNFFVRNREKSIRCSSLH 37


>SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase
           Ubp21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1129

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = -1

Query: 294 DYDTRIVLKVYKYSSRLLNG 235
           D+DT I LK++ Y ++ ++G
Sbjct: 712 DFDTYIFLKIFDYETQQISG 731


>SPAC23D3.13c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1616

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 20/74 (27%), Positives = 30/74 (40%)
 Frame = -1

Query: 426 TQLLILNVYSSDRARV*GNTRPQISTFFGYRPCDGRALHFALVIDYDTRIVLKVYKYSSR 247
           + LL  N+  S  + +  N R   ST F        A   A +  YD+    K   +S R
Sbjct: 554 SNLLSGNMTHSASSSISHNGRLSTSTMFSVEGLKEAATTIAAIASYDSNHDEKQKCFSLR 613

Query: 246 LLNGFRCLMTTAGI 205
            +   RCL + A +
Sbjct: 614 EILFLRCLSSIAKV 627


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,109,270
Number of Sequences: 5004
Number of extensions: 42836
Number of successful extensions: 120
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 218398248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)