Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00217
(531 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0319 - 16712572-16712654,16712756-16712797,16713955-167142... 146 1e-35
03_01_0276 + 2124538-2124550,2124678-2124962,2126813-2126854,212... 146 1e-35
02_05_1201 + 34929577-34929589,34930252-34930587,34931378-349314... 146 1e-35
12_02_1115 - 26173351-26173725,26174241-26174344,26174812-26174845 39 0.002
08_02_1367 + 26432425-26432622,26434071-26434162,26434337-264344... 29 1.8
03_05_0291 - 22837412-22838128 29 1.8
11_06_0432 + 23448482-23448570,23448987-23449100,23449514-234495... 29 2.3
06_03_0458 - 20995834-20996004,20996404-20997309,20997778-209979... 28 4.1
06_03_0025 - 15577231-15577420,15577682-15577813,15578025-155781... 28 5.4
06_01_0221 + 1690978-1692171,1692265-1692276 27 7.1
01_05_0033 + 17390571-17390894,17394152-17394199,17394479-173945... 27 7.1
10_02_0173 + 6191676-6191764,6192147-6192260,6192411-6192638,619... 27 9.4
>10_08_0319 -
16712572-16712654,16712756-16712797,16713955-16714239,
16714346-16714358
Length = 140
Score = 146 bits (354), Expect = 1e-35
Identities = 66/87 (75%), Positives = 80/87 (91%), Gaps = 1/87 (1%)
Frame = +2
Query: 8 GRKFRISLGLPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVATVKKGKP 187
G KFR+SLGLPV A +NCADNTGAKNLY+I+V+GIKGRLNRLP+A GDM++ATVKKGKP
Sbjct: 11 GNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKP 70
Query: 188 ELRKKVMPAVVIRQRKPFRRRD-EYLY 265
+LRKKVMPAV++RQRKP+RR+D Y+Y
Sbjct: 71 DLRKKVMPAVIVRQRKPWRRKDGVYMY 97
Score = 78.6 bits (185), Expect = 3e-15
Identities = 33/38 (86%), Positives = 36/38 (94%)
Frame = +1
Query: 256 VFIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 369
V++YFEDNAGVIVN KGEMKGSAITGP+ KECADLWPR
Sbjct: 94 VYMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPR 131
>03_01_0276 +
2124538-2124550,2124678-2124962,2126813-2126854,
2126943-2127025
Length = 140
Score = 146 bits (354), Expect = 1e-35
Identities = 66/87 (75%), Positives = 80/87 (91%), Gaps = 1/87 (1%)
Frame = +2
Query: 8 GRKFRISLGLPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVATVKKGKP 187
G KFR+SLGLPV A +NCADNTGAKNLY+I+V+GIKGRLNRLP+A GDM++ATVKKGKP
Sbjct: 11 GNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKP 70
Query: 188 ELRKKVMPAVVIRQRKPFRRRD-EYLY 265
+LRKKVMPAV++RQRKP+RR+D Y+Y
Sbjct: 71 DLRKKVMPAVIVRQRKPWRRKDGVYMY 97
Score = 78.6 bits (185), Expect = 3e-15
Identities = 33/38 (86%), Positives = 36/38 (94%)
Frame = +1
Query: 256 VFIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 369
V++YFEDNAGVIVN KGEMKGSAITGP+ KECADLWPR
Sbjct: 94 VYMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPR 131
>02_05_1201 +
34929577-34929589,34930252-34930587,34931378-34931419,
34931630-34931712
Length = 157
Score = 146 bits (354), Expect = 1e-35
Identities = 66/87 (75%), Positives = 80/87 (91%), Gaps = 1/87 (1%)
Frame = +2
Query: 8 GRKFRISLGLPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVATVKKGKP 187
G KFR+SLGLPV A +NCADNTGAKNLY+I+V+GIKGRLNRLP+A GDM++ATVKKGKP
Sbjct: 28 GNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKP 87
Query: 188 ELRKKVMPAVVIRQRKPFRRRD-EYLY 265
+LRKKVMPAV++RQRKP+RR+D Y+Y
Sbjct: 88 DLRKKVMPAVIVRQRKPWRRKDGVYMY 114
Score = 78.6 bits (185), Expect = 3e-15
Identities = 33/38 (86%), Positives = 36/38 (94%)
Frame = +1
Query: 256 VFIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 369
V++YFEDNAGVIVN KGEMKGSAITGP+ KECADLWPR
Sbjct: 111 VYMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPR 148
>12_02_1115 - 26173351-26173725,26174241-26174344,26174812-26174845
Length = 170
Score = 39.1 bits (87), Expect = 0.002
Identities = 17/29 (58%), Positives = 22/29 (75%)
Frame = +1
Query: 262 IYFEDNAGVIVNNKGEMKGSAITGPVAKE 348
I F+DNA V+VNNKGE+ G+ + GPV E
Sbjct: 125 IQFDDNAIVLVNNKGELIGTRVFGPVPHE 153
>08_02_1367 +
26432425-26432622,26434071-26434162,26434337-26434403,
26434519-26434638,26434792-26435023,26435525-26435606,
26435985-26436117,26436332-26436537,26436633-26436758,
26437208-26437907
Length = 651
Score = 29.5 bits (63), Expect = 1.8
Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
Frame = -3
Query: 190 FRFTLFDCGHNHVPGTGRRQSVQATFDTLDSDHIQILCPCVVGAVDYCSHW--ETQGDTE 17
FRF + D H+ GT + + ++ T+D H L + Y S+W QG E
Sbjct: 455 FRFCIADSEHDWREGTDQYKFIEQCLSTVDRKHQPWLIFAAHRVLGYSSNWWYADQGSFE 514
Query: 16 FP 11
P
Sbjct: 515 EP 516
>03_05_0291 - 22837412-22838128
Length = 238
Score = 29.5 bits (63), Expect = 1.8
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Frame = -2
Query: 383 AFEAIRGHRSAHSLATGPVMAEPFI--SPLLLTMTPALSS 270
+++A+ GH+++H T P MA + P T +PA SS
Sbjct: 100 SYQALGGHKTSHRPRTPPTMAAVVVVDEPAATTASPAASS 139
>11_06_0432 +
23448482-23448570,23448987-23449100,23449514-23449580,
23449614-23449741,23452786-23453071,23453264-23453414,
23453603-23453799
Length = 343
Score = 29.1 bits (62), Expect = 2.3
Identities = 14/23 (60%), Positives = 16/23 (69%)
Frame = +2
Query: 425 VLLSFPSTSKSNPKNYNLRNRHL 493
VLLSFPS K +P+N NL R L
Sbjct: 261 VLLSFPSEIKVHPENLNLAARSL 283
>06_03_0458 -
20995834-20996004,20996404-20997309,20997778-20997942,
20998024-20998353,20998471-20998527,20998579-20998692,
20999220-20999381,20999465-20999527,21001100-21001207,
21001598-21001675,21001771-21001902
Length = 761
Score = 28.3 bits (60), Expect = 4.1
Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
Frame = +1
Query: 271 EDNAGVIV--NNKGEMKGSAITGPVAKECAD 357
ED +I+ N+KG +GS ITG + + CA+
Sbjct: 715 EDGDKIIMSSNDKGSNQGSFITGKIVESCAE 745
>06_03_0025 -
15577231-15577420,15577682-15577813,15578025-15578173,
15579012-15579071,15593208-15593297,15593604-15593871,
15594517-15594608,15595355-15595441,15597333-15597440,
15597709-15597822,15598253-15598420,15599442-15599579,
15599699-15599908,15600986-15601237,15601965-15602111,
15603327-15603443
Length = 773
Score = 27.9 bits (59), Expect = 5.4
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = -3
Query: 244 SERFPLPDDHCRHYLFPEFRFTLFDCGHNHVPGTGRRQS 128
S R PLP+D C Y+ ++R + H+ G R S
Sbjct: 25 SSRVPLPEDTCDSYVEQKYRCYIRTLKGCHISGRNRLDS 63
>06_01_0221 + 1690978-1692171,1692265-1692276
Length = 401
Score = 27.5 bits (58), Expect = 7.1
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = -1
Query: 171 TVATIMSPEPAAGSLFRRPLIPWTAITYRFFAPVLSAQLITA 46
++A + S P + + FRR L+P+ A F A S LI A
Sbjct: 160 SLAVLSSSFPPSSAAFRRELLPYMAPLLAFLAKTGSPFLINA 201
>01_05_0033 +
17390571-17390894,17394152-17394199,17394479-17394526,
17395224-17395400,17395492-17395642,17395742-17395828,
17397236-17397360,17397608-17397726,17399983-17400082,
17400188-17400223
Length = 404
Score = 27.5 bits (58), Expect = 7.1
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -2
Query: 320 EPFISPLLLTMTPALSSKYINTHHAF 243
E FI+P+ + P + ++THHAF
Sbjct: 241 EQFIAPMSTVLYPEVGGGTLDTHHAF 266
>10_02_0173 +
6191676-6191764,6192147-6192260,6192411-6192638,
6192898-6193183,6193350-6193500,6193615-6193811
Length = 354
Score = 27.1 bits (57), Expect = 9.4
Identities = 13/22 (59%), Positives = 14/22 (63%)
Frame = +2
Query: 428 LLSFPSTSKSNPKNYNLRNRHL 493
LLSFPS K +P N NL R L
Sbjct: 273 LLSFPSEIKVHPANLNLGGRSL 294
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,617,149
Number of Sequences: 37544
Number of extensions: 323956
Number of successful extensions: 932
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 906
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 931
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1178343540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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