Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00217
         (531 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_294| Best HMM Match : Ribosomal_L14 (HMM E-Value=4.1e-23)          151   3e-37
SB_52932| Best HMM Match : Ank (HMM E-Value=0)                         30   1.4  
SB_10243| Best HMM Match : Ank (HMM E-Value=0)                         30   1.4  
SB_25243| Best HMM Match : Protamine_P1 (HMM E-Value=5.7)              29   3.1  
SB_46476| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_41711| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.2  
SB_49550| Best HMM Match : SSXT (HMM E-Value=5.5)                      27   9.5  
SB_18995| Best HMM Match : rve (HMM E-Value=0.0012)                    27   9.5  
SB_14764| Best HMM Match : zf-CCHC (HMM E-Value=0.0048)                27   9.5  

>SB_294| Best HMM Match : Ribosomal_L14 (HMM E-Value=4.1e-23)
          Length = 145

 Score =  151 bits (367), Expect = 3e-37
 Identities = 73/94 (77%), Positives = 84/94 (89%), Gaps = 1/94 (1%)
 Frame = +2

Query: 8   GRKFRISLGLPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVATVKKGKP 187
           G KFRI+LGLPVGAVINCADNTG KNLY+IAV+GIKGRLNRLPAA SGDM++ATVKKGKP
Sbjct: 30  GGKFRIALGLPVGAVINCADNTGGKNLYIIAVKGIKGRLNRLPAAASGDMVLATVKKGKP 89

Query: 188 ELRKKVMPAVVIRQRKPFRRRD-EYLYTLRTMRV 286
           ELRKKVMPAVVIRQRK +RR++  +LY    ++V
Sbjct: 90  ELRKKVMPAVVIRQRKAYRRKNGVFLYFEANIKV 123


>SB_52932| Best HMM Match : Ank (HMM E-Value=0)
          Length = 1266

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +2

Query: 35   LPVGAVINCADNTGAKNLYVIAVQGIKGRLN 127
            L +GA ++CADN G   L  +A QG    +N
Sbjct: 913  LKLGATVDCADNEGRTPLQAVAWQGCYNLVN 943


>SB_10243| Best HMM Match : Ank (HMM E-Value=0)
          Length = 475

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +2

Query: 35  LPVGAVINCADNTGAKNLYVIAVQGIKGRLN 127
           L +GA ++CADN G   L  +A QG    +N
Sbjct: 109 LKLGATVDCADNEGRTPLQAVAWQGCYNLVN 139


>SB_25243| Best HMM Match : Protamine_P1 (HMM E-Value=5.7)
          Length = 201

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +2

Query: 359 CGRVLPQTRALSLEYTFKISSC 424
           CGR +P  RA+  +Y  K S C
Sbjct: 139 CGRAIPTLRAMRAQYELKASEC 160


>SB_46476| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 381

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -3

Query: 118 TFDTLDSDHIQILCPCVVGAVDYCSHWETQGDT 20
           T   + + +I   CP VVG V+ CS W     T
Sbjct: 330 TVKDVATKYIYDRCPAVVGVVEACSSWAVLAKT 362


>SB_41711| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1662

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 17/46 (36%), Positives = 20/46 (43%)
 Frame = +1

Query: 28  PGSPSGSSNQLRRQHRGKESVCDRCPRYQRSPEQTAGGRFRGHDCG 165
           P   S SS+  R +H+GK S         RSP  T G     HD G
Sbjct: 107 PNPASLSSHSRRERHQGKGSPMSSPAMRPRSPMVTPGSH-SNHDAG 151


>SB_49550| Best HMM Match : SSXT (HMM E-Value=5.5)
          Length = 283

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +2

Query: 431 LSFPSTSKSNPKNYNLRNRHLQCK 502
           L+ P+T  SN K+ N++ R  QCK
Sbjct: 194 LAAPNTGMSNTKHRNVKVRSFQCK 217


>SB_18995| Best HMM Match : rve (HMM E-Value=0.0012)
          Length = 1225

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = -1

Query: 165 ATIMSPEPAAGSLFRRPLIPWTAITYRFFAPVLSAQLITA 46
           AT  S + A+ SL      PW+  T+R   P +SA+  TA
Sbjct: 816 ATSRSGDSASRSLTNLGCYPWSKQTFRHEGPPISARPCTA 855


>SB_14764| Best HMM Match : zf-CCHC (HMM E-Value=0.0048)
          Length = 820

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = +1

Query: 46  SSNQLRRQHRGKESVCDRCPRYQRSPEQTAGGRFRGHDC 162
           +S   RR+ RG+   CD C  YQ    Q +    RG DC
Sbjct: 440 TSKNYRRKQRGQGKQCDNC-GYQHMANQESCPA-RGKDC 476


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,479,983
Number of Sequences: 59808
Number of extensions: 362848
Number of successful extensions: 833
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 776
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 832
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1191330434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)