Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00217
         (531 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative microtubu...    23   4.8  
AY341161-1|AAR13725.1|  159|Anopheles gambiae CED6 protein.            23   8.4  

>AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative microtubule
           binding protein protein.
          Length = 838

 Score = 23.4 bits (48), Expect = 4.8
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -1

Query: 78  APVLSAQLITAPTGRPRE 25
           APV+ + ++TAP  RP +
Sbjct: 91  APVVPSSVVTAPPARPSQ 108


>AY341161-1|AAR13725.1|  159|Anopheles gambiae CED6 protein.
          Length = 159

 Score = 22.6 bits (46), Expect = 8.4
 Identities = 13/48 (27%), Positives = 17/48 (35%)
 Frame = +2

Query: 11  RKFRISLGLPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGD 154
           R   I    P+  +  CAD  G K  +    +   G       A SGD
Sbjct: 58  RSLTIMHQFPLHKISYCADEKGVKKFFSFIAKTGTGATPTSSIASSGD 105


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 556,500
Number of Sequences: 2352
Number of extensions: 11441
Number of successful extensions: 19
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 563,979
effective HSP length: 60
effective length of database: 422,859
effective search space used: 49051644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)