Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00217
(531 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC062716-1|AAH62716.1| 140|Homo sapiens ribosomal protein L23 p... 153 5e-37
X55954-1|CAA39417.1| 140|Homo sapiens HL23 ribosomal protein pr... 152 6e-37
X52839-1|CAA37023.1| 140|Homo sapiens ribosomal protein L17 pro... 152 6e-37
BC106061-1|AAI06062.1| 140|Homo sapiens RPL23 protein protein. 152 6e-37
BC104651-1|AAI04652.1| 140|Homo sapiens ribosomal protein L23 p... 152 6e-37
BC010114-1|AAH10114.1| 140|Homo sapiens ribosomal protein L23 p... 152 6e-37
BC003518-1|AAH03518.1| 134|Homo sapiens Similar to ribosomal pr... 152 6e-37
AB061827-1|BAB79465.1| 140|Homo sapiens ribosomal protein L23 p... 152 6e-37
BC034378-1|AAH34378.1| 77|Homo sapiens RPL23 protein protein. 126 6e-29
AY172136-1|AAO31738.1| 1906|Homo sapiens retinoic acid induced 1... 29 7.7
AL834486-1|CAD39144.1| 568|Homo sapiens hypothetical protein pr... 29 7.7
AL834468-1|CAD39127.1| 1285|Homo sapiens hypothetical protein pr... 29 7.7
AK131400-1|BAD18547.1| 852|Homo sapiens protein ( Homo sapiens ... 29 7.7
AK128850-1|BAC87646.1| 673|Homo sapiens protein ( Homo sapiens ... 29 7.7
AJ313524-1|CAC86408.1| 852|Homo sapiens putative binding protei... 29 7.7
AB058723-1|BAB47449.1| 1644|Homo sapiens KIAA1820 protein protein. 29 7.7
>BC062716-1|AAH62716.1| 140|Homo sapiens ribosomal protein L23
protein.
Length = 140
Score = 153 bits (370), Expect = 5e-37
Identities = 73/87 (83%), Positives = 81/87 (93%), Gaps = 1/87 (1%)
Frame = +2
Query: 8 GRKFRISLGLPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVATVKKGKP 187
G KFRISLGLPVGAVINCADNTGAKNLY+I+V+GIKGRLNRLPAAG GDM++ATVKKGKP
Sbjct: 11 GAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKP 70
Query: 188 ELRKKVMPAVVIRQRKPFRRRD-EYLY 265
ELRKKV PAVVIRQRK +RR+D +LY
Sbjct: 71 ELRKKVRPAVVIRQRKSYRRKDGVFLY 97
Score = 85.4 bits (202), Expect = 1e-16
Identities = 37/38 (97%), Positives = 38/38 (100%)
Frame = +1
Query: 256 VFIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 369
VF+YFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR
Sbjct: 94 VFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 131
>X55954-1|CAA39417.1| 140|Homo sapiens HL23 ribosomal protein
protein.
Length = 140
Score = 152 bits (369), Expect = 6e-37
Identities = 73/87 (83%), Positives = 81/87 (93%), Gaps = 1/87 (1%)
Frame = +2
Query: 8 GRKFRISLGLPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVATVKKGKP 187
G KFRISLGLPVGAVINCADNTGAKNLY+I+V+GIKGRLNRLPAAG GDM++ATVKKGKP
Sbjct: 11 GAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKP 70
Query: 188 ELRKKVMPAVVIRQRKPFRRRD-EYLY 265
ELRKKV PAVVIRQRK +RR+D +LY
Sbjct: 71 ELRKKVHPAVVIRQRKSYRRKDGVFLY 97
Score = 85.4 bits (202), Expect = 1e-16
Identities = 37/38 (97%), Positives = 38/38 (100%)
Frame = +1
Query: 256 VFIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 369
VF+YFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR
Sbjct: 94 VFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 131
>X52839-1|CAA37023.1| 140|Homo sapiens ribosomal protein L17
protein.
Length = 140
Score = 152 bits (369), Expect = 6e-37
Identities = 73/87 (83%), Positives = 81/87 (93%), Gaps = 1/87 (1%)
Frame = +2
Query: 8 GRKFRISLGLPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVATVKKGKP 187
G KFRISLGLPVGAVINCADNTGAKNLY+I+V+GIKGRLNRLPAAG GDM++ATVKKGKP
Sbjct: 11 GAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKP 70
Query: 188 ELRKKVMPAVVIRQRKPFRRRD-EYLY 265
ELRKKV PAVVIRQRK +RR+D +LY
Sbjct: 71 ELRKKVHPAVVIRQRKSYRRKDGVFLY 97
Score = 85.4 bits (202), Expect = 1e-16
Identities = 37/38 (97%), Positives = 38/38 (100%)
Frame = +1
Query: 256 VFIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 369
VF+YFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR
Sbjct: 94 VFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 131
>BC106061-1|AAI06062.1| 140|Homo sapiens RPL23 protein protein.
Length = 140
Score = 152 bits (369), Expect = 6e-37
Identities = 73/87 (83%), Positives = 81/87 (93%), Gaps = 1/87 (1%)
Frame = +2
Query: 8 GRKFRISLGLPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVATVKKGKP 187
G KFRISLGLPVGAVINCADNTGAKNLY+I+V+GIKGRLNRLPAAG GDM++ATVKKGKP
Sbjct: 11 GAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKP 70
Query: 188 ELRKKVMPAVVIRQRKPFRRRD-EYLY 265
ELRKKV PAVVIRQRK +RR+D +LY
Sbjct: 71 ELRKKVHPAVVIRQRKSYRRKDGVFLY 97
Score = 85.4 bits (202), Expect = 1e-16
Identities = 37/38 (97%), Positives = 38/38 (100%)
Frame = +1
Query: 256 VFIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 369
VF+YFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR
Sbjct: 94 VFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 131
>BC104651-1|AAI04652.1| 140|Homo sapiens ribosomal protein L23
protein.
Length = 140
Score = 152 bits (369), Expect = 6e-37
Identities = 73/87 (83%), Positives = 81/87 (93%), Gaps = 1/87 (1%)
Frame = +2
Query: 8 GRKFRISLGLPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVATVKKGKP 187
G KFRISLGLPVGAVINCADNTGAKNLY+I+V+GIKGRLNRLPAAG GDM++ATVKKGKP
Sbjct: 11 GAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKP 70
Query: 188 ELRKKVMPAVVIRQRKPFRRRD-EYLY 265
ELRKKV PAVVIRQRK +RR+D +LY
Sbjct: 71 ELRKKVHPAVVIRQRKSYRRKDGVFLY 97
Score = 85.4 bits (202), Expect = 1e-16
Identities = 37/38 (97%), Positives = 38/38 (100%)
Frame = +1
Query: 256 VFIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 369
VF+YFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR
Sbjct: 94 VFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 131
>BC010114-1|AAH10114.1| 140|Homo sapiens ribosomal protein L23
protein.
Length = 140
Score = 152 bits (369), Expect = 6e-37
Identities = 73/87 (83%), Positives = 81/87 (93%), Gaps = 1/87 (1%)
Frame = +2
Query: 8 GRKFRISLGLPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVATVKKGKP 187
G KFRISLGLPVGAVINCADNTGAKNLY+I+V+GIKGRLNRLPAAG GDM++ATVKKGKP
Sbjct: 11 GAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKP 70
Query: 188 ELRKKVMPAVVIRQRKPFRRRD-EYLY 265
ELRKKV PAVVIRQRK +RR+D +LY
Sbjct: 71 ELRKKVHPAVVIRQRKSYRRKDGVFLY 97
Score = 85.4 bits (202), Expect = 1e-16
Identities = 37/38 (97%), Positives = 38/38 (100%)
Frame = +1
Query: 256 VFIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 369
VF+YFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR
Sbjct: 94 VFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 131
>BC003518-1|AAH03518.1| 134|Homo sapiens Similar to ribosomal
protein L23 protein.
Length = 134
Score = 152 bits (369), Expect = 6e-37
Identities = 73/87 (83%), Positives = 81/87 (93%), Gaps = 1/87 (1%)
Frame = +2
Query: 8 GRKFRISLGLPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVATVKKGKP 187
G KFRISLGLPVGAVINCADNTGAKNLY+I+V+GIKGRLNRLPAAG GDM++ATVKKGKP
Sbjct: 5 GAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKP 64
Query: 188 ELRKKVMPAVVIRQRKPFRRRD-EYLY 265
ELRKKV PAVVIRQRK +RR+D +LY
Sbjct: 65 ELRKKVHPAVVIRQRKSYRRKDGVFLY 91
Score = 85.4 bits (202), Expect = 1e-16
Identities = 37/38 (97%), Positives = 38/38 (100%)
Frame = +1
Query: 256 VFIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 369
VF+YFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR
Sbjct: 88 VFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 125
>AB061827-1|BAB79465.1| 140|Homo sapiens ribosomal protein L23
protein.
Length = 140
Score = 152 bits (369), Expect = 6e-37
Identities = 73/87 (83%), Positives = 81/87 (93%), Gaps = 1/87 (1%)
Frame = +2
Query: 8 GRKFRISLGLPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVATVKKGKP 187
G KFRISLGLPVGAVINCADNTGAKNLY+I+V+GIKGRLNRLPAAG GDM++ATVKKGKP
Sbjct: 11 GAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKP 70
Query: 188 ELRKKVMPAVVIRQRKPFRRRD-EYLY 265
ELRKKV PAVVIRQRK +RR+D +LY
Sbjct: 71 ELRKKVHPAVVIRQRKSYRRKDGVFLY 97
Score = 85.4 bits (202), Expect = 1e-16
Identities = 37/38 (97%), Positives = 38/38 (100%)
Frame = +1
Query: 256 VFIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 369
VF+YFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR
Sbjct: 94 VFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 131
>BC034378-1|AAH34378.1| 77|Homo sapiens RPL23 protein protein.
Length = 77
Score = 126 bits (303), Expect = 6e-29
Identities = 58/65 (89%), Positives = 63/65 (96%)
Frame = +2
Query: 8 GRKFRISLGLPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVATVKKGKP 187
G KFRISLGLPVGAVINCADNTGAKNLY+I+V+GIKGRLNRLPAAG GDM++ATVKKGKP
Sbjct: 11 GAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKP 70
Query: 188 ELRKK 202
ELRKK
Sbjct: 71 ELRKK 75
>AY172136-1|AAO31738.1| 1906|Homo sapiens retinoic acid induced 1
protein.
Length = 1906
Score = 29.5 bits (63), Expect = 7.7
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -2
Query: 368 RGHRSAHSLATGPVMAEPFISPLLLTMTP 282
+G AH L+ GP+ P++ P LL +TP
Sbjct: 1450 KGRAGAHGLSKGPLEKRPYLGPALL-LTP 1477
>AL834486-1|CAD39144.1| 568|Homo sapiens hypothetical protein
protein.
Length = 568
Score = 29.5 bits (63), Expect = 7.7
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -2
Query: 368 RGHRSAHSLATGPVMAEPFISPLLLTMTP 282
+G AH L+ GP+ P++ P LL +TP
Sbjct: 112 KGRAGAHGLSKGPLEKRPYLGPALL-LTP 139
>AL834468-1|CAD39127.1| 1285|Homo sapiens hypothetical protein
protein.
Length = 1285
Score = 29.5 bits (63), Expect = 7.7
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -2
Query: 368 RGHRSAHSLATGPVMAEPFISPLLLTMTP 282
+G AH L+ GP+ P++ P LL +TP
Sbjct: 829 KGRAGAHGLSKGPLEKRPYLGPALL-LTP 856
>AK131400-1|BAD18547.1| 852|Homo sapiens protein ( Homo sapiens
cDNA FLJ16493 fis, clone CTONG3004550, weakly similar
to Homo sapiens SH3-domain binding protein 4 (SH3BP4).
).
Length = 852
Score = 29.5 bits (63), Expect = 7.7
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -3
Query: 205 YLFPEFRFTLFDCGHNHVPG 146
Y+ P F L CGHN++PG
Sbjct: 379 YIHPNFTVVLTVCGHNYMPG 398
>AK128850-1|BAC87646.1| 673|Homo sapiens protein ( Homo sapiens
cDNA FLJ46632 fis, clone TRACH2024730, weakly similar
to Homo sapiens SH3-domain binding protein 4 (SH3BP4).
).
Length = 673
Score = 29.5 bits (63), Expect = 7.7
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -3
Query: 205 YLFPEFRFTLFDCGHNHVPG 146
Y+ P F L CGHN++PG
Sbjct: 200 YIHPSFTVVLTVCGHNYMPG 219
>AJ313524-1|CAC86408.1| 852|Homo sapiens putative binding protein
7a5 protein.
Length = 852
Score = 29.5 bits (63), Expect = 7.7
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -3
Query: 205 YLFPEFRFTLFDCGHNHVPG 146
Y+ P F L CGHN++PG
Sbjct: 379 YIHPSFTVVLTVCGHNYMPG 398
>AB058723-1|BAB47449.1| 1644|Homo sapiens KIAA1820 protein protein.
Length = 1644
Score = 29.5 bits (63), Expect = 7.7
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -2
Query: 368 RGHRSAHSLATGPVMAEPFISPLLLTMTP 282
+G AH L+ GP+ P++ P LL +TP
Sbjct: 1454 KGRAGAHGLSKGPLEKRPYLGPALL-LTP 1481
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 77,047,446
Number of Sequences: 237096
Number of extensions: 1682388
Number of successful extensions: 3614
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 3529
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3614
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 5160237082
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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