Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00217
         (531 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE013599-3487|AAF46914.1|  140|Drosophila melanogaster CG3661-PA...   159   3e-39
M85295-1|AAA28867.1|  140|Drosophila melanogaster ribosomal prot...   144   7e-35
BT023778-1|AAZ41787.1| 2016|Drosophila melanogaster LD21067p pro...    28   9.1  
AY128444-1|AAM75037.1| 1332|Drosophila melanogaster LD21041p pro...    28   9.1  
AJ271740-1|CAB93524.1| 16215|Drosophila melanogaster D-Titin pro...    28   9.1  
AE014296-405|AAG22226.2| 18074|Drosophila melanogaster CG1915-PC...    28   9.1  
AE014134-1407|AAF52607.1| 2016|Drosophila melanogaster CG8552-PA...    28   9.1  

>AE013599-3487|AAF46914.1|  140|Drosophila melanogaster CG3661-PA
           protein.
          Length = 140

 Score =  159 bits (385), Expect = 3e-39
 Identities = 76/82 (92%), Positives = 78/82 (95%)
 Frame = +2

Query: 8   GRKFRISLGLPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVATVKKGKP 187
           G KFRISLGLPVGAV+NCADNTGAKNLYVIAV GI+GRLNRLPAAG GDM VATVKKGKP
Sbjct: 11  GGKFRISLGLPVGAVMNCADNTGAKNLYVIAVHGIRGRLNRLPAAGVGDMFVATVKKGKP 70

Query: 188 ELRKKVMPAVVIRQRKPFRRRD 253
           ELRKKVMPAVVIRQRKPFRRRD
Sbjct: 71  ELRKKVMPAVVIRQRKPFRRRD 92



 Score = 86.2 bits (204), Expect = 2e-17
 Identities = 38/38 (100%), Positives = 38/38 (100%)
 Frame = +1

Query: 256 VFIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 369
           VFIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR
Sbjct: 94  VFIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 131


>M85295-1|AAA28867.1|  140|Drosophila melanogaster ribosomal protein
           L17A protein.
          Length = 140

 Score =  144 bits (349), Expect = 7e-35
 Identities = 70/82 (85%), Positives = 72/82 (87%)
 Frame = +2

Query: 8   GRKFRISLGLPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVATVKKGKP 187
           G KFRISLGLPVGAV+NCADNTGAKNLYVIAV GI+GRLNRLPAAG GDM VATVKKGKP
Sbjct: 11  GGKFRISLGLPVGAVMNCADNTGAKNLYVIAVHGIRGRLNRLPAAGVGDMFVATVKKGKP 70

Query: 188 ELRKKVMPAVVIRQRKPFRRRD 253
           ELRKKV      RQRKPFRRRD
Sbjct: 71  ELRKKVSVVPSARQRKPFRRRD 92



 Score = 86.2 bits (204), Expect = 2e-17
 Identities = 38/38 (100%), Positives = 38/38 (100%)
 Frame = +1

Query: 256 VFIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 369
           VFIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR
Sbjct: 94  VFIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 131


>BT023778-1|AAZ41787.1| 2016|Drosophila melanogaster LD21067p protein.
          Length = 2016

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = -1

Query: 162  TIMSPEPAAGSLFRRPLIPWTAITYRFFAPVLSAQLITAPTG 37
            TI++P P   S      IP T  +     P  SA+L+ AP G
Sbjct: 1011 TILTPAPDTTSTLFANNIPTTTPSIPDIVPTTSAELVDAPPG 1052


>AY128444-1|AAM75037.1| 1332|Drosophila melanogaster LD21041p
           protein.
          Length = 1332

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = -1

Query: 162 TIMSPEPAAGSLFRRPLIPWTAITYRFFAPVLSAQLITAPTG 37
           TI++P P   S      IP T  +     P  SA+L+ AP G
Sbjct: 327 TILTPAPDTTSTLFANNIPTTTPSIPDIVPTTSAELVDAPPG 368


>AJ271740-1|CAB93524.1| 16215|Drosophila melanogaster D-Titin protein.
          Length = 16215

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = +2

Query: 299  TRAK*RARPSQGL*PKNVLICGRVLPQTRALSLEYTFKISS 421
            T+ + R R +Q +     L  GR+LP +   S++ TFK++S
Sbjct: 8892 TQHEVRVRETQAIEESEELTDGRLLPVSAVESIDSTFKVTS 8932


>AE014296-405|AAG22226.2| 18074|Drosophila melanogaster CG1915-PC,
            isoform C protein.
          Length = 18074

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = +2

Query: 299  TRAK*RARPSQGL*PKNVLICGRVLPQTRALSLEYTFKISS 421
            T+ + R R +Q +     L  GR+LP +   S++ TFK++S
Sbjct: 8892 TQHEVRVRETQAIEESEELTDGRLLPVSAVESIDSTFKVTS 8932


>AE014134-1407|AAF52607.1| 2016|Drosophila melanogaster CG8552-PA
            protein.
          Length = 2016

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = -1

Query: 162  TIMSPEPAAGSLFRRPLIPWTAITYRFFAPVLSAQLITAPTG 37
            TI++P P   S      IP T  +     P  SA+L+ AP G
Sbjct: 1011 TILTPAPDTTSTLFANNIPTTTPSIPDIVPTTSAELVDAPPG 1052


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,289,266
Number of Sequences: 53049
Number of extensions: 540300
Number of successful extensions: 2178
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2178
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 1991467008
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)