Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00217
         (531 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U32305-14|AAK18857.1|  140|Caenorhabditis elegans Ribosomal prot...   141   3e-34
Z75541-6|CAA99857.2|  644|Caenorhabditis elegans Hypothetical pr...    30   0.90 
AF440800-1|AAL28139.1|  644|Caenorhabditis elegans transcription...    30   0.90 
Z99171-7|CAB16312.1|  188|Caenorhabditis elegans Hypothetical pr...    29   2.1  
U58753-1|AAC24437.2|  814|Caenorhabditis elegans Hypothetical pr...    28   4.8  
Z69787-1|CAA93642.1|  300|Caenorhabditis elegans Hypothetical pr...    27   6.3  
Z75541-7|CAI79201.1|  197|Caenorhabditis elegans Hypothetical pr...    27   8.4  
Z73972-2|CAA98258.1|  316|Caenorhabditis elegans Hypothetical pr...    27   8.4  
Z73972-1|CAA98257.1|  316|Caenorhabditis elegans Hypothetical pr...    27   8.4  
X51623-1|CAA35955.1|  316|Caenorhabditis elegans collagen protein.     27   8.4  
X51622-1|CAA35954.1|  316|Caenorhabditis elegans collagen protein.     27   8.4  
U41026-6|AAA82353.1| 1081|Caenorhabditis elegans Hypothetical pr...    27   8.4  

>U32305-14|AAK18857.1|  140|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 23 protein.
          Length = 140

 Score =  141 bits (341), Expect = 3e-34
 Identities = 66/82 (80%), Positives = 74/82 (90%)
 Frame = +2

Query: 8   GRKFRISLGLPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVATVKKGKP 187
           G KFRISLGLPVGAV+NCADNTGAKNL+VI+V GI+GRLNRLP+AG GDM V +VKKGKP
Sbjct: 11  GAKFRISLGLPVGAVMNCADNTGAKNLFVISVYGIRGRLNRLPSAGVGDMFVCSVKKGKP 70

Query: 188 ELRKKVMPAVVIRQRKPFRRRD 253
           ELRKKV+  VVIRQRK FRR+D
Sbjct: 71  ELRKKVLQGVVIRQRKQFRRKD 92



 Score = 84.6 bits (200), Expect = 4e-17
 Identities = 37/37 (100%), Positives = 37/37 (100%)
 Frame = +1

Query: 259 FIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 369
           FIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR
Sbjct: 95  FIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 131


>Z75541-6|CAA99857.2|  644|Caenorhabditis elegans Hypothetical
           protein F52B5.5a protein.
          Length = 644

 Score = 30.3 bits (65), Expect = 0.90
 Identities = 17/43 (39%), Positives = 24/43 (55%)
 Frame = +2

Query: 389 LSLEYTFKISSCVLLSFPSTSKSNPKNYNLRNRHLQCKCASLN 517
           ++LE  F +++      PSTS S+P N N R R L  +C S N
Sbjct: 443 VNLENMFNVTNTTAQMEPSTSYSSPSNSNNRKRFLN-ECDSPN 484


>AF440800-1|AAL28139.1|  644|Caenorhabditis elegans transcription
           factor CEP-1 protein.
          Length = 644

 Score = 30.3 bits (65), Expect = 0.90
 Identities = 17/43 (39%), Positives = 24/43 (55%)
 Frame = +2

Query: 389 LSLEYTFKISSCVLLSFPSTSKSNPKNYNLRNRHLQCKCASLN 517
           ++LE  F +++      PSTS S+P N N R R L  +C S N
Sbjct: 443 VNLENMFNVTNTTAQMEPSTSYSSPSNSNNRKRFLN-ECDSPN 484


>Z99171-7|CAB16312.1|  188|Caenorhabditis elegans Hypothetical
           protein F47G4.8 protein.
          Length = 188

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = -1

Query: 426 TQLLILNVYSSDRARV*GNTRPQISTFFGYRPCDGRALHFALVI 295
           T LL  ++  S RAR+     P +  F  YRPC  R L +  ++
Sbjct: 80  TTLLGNSIAPSPRARLTSQCSPGLGGFGVYRPCTSRTLPYRQIL 123


>U58753-1|AAC24437.2|  814|Caenorhabditis elegans Hypothetical
           protein W03B1.2 protein.
          Length = 814

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -1

Query: 138 AGSLFRRPLIPWTAITYRFFAPVLSAQLITA 46
           A  LFR  ++P+   TY F   +L   L+TA
Sbjct: 562 ASCLFRSTIMPFVVFTYIFVTGILLVNLLTA 592


>Z69787-1|CAA93642.1|  300|Caenorhabditis elegans Hypothetical
           protein C44C10.1 protein.
          Length = 300

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 11/32 (34%), Positives = 14/32 (43%)
 Frame = +1

Query: 28  PGSPSGSSNQLRRQHRGKESVCDRCPRYQRSP 123
           PG P G+ N       G    CD CP  + +P
Sbjct: 267 PGQPGGNGNNGADGETGAPGGCDHCPPPRTAP 298


>Z75541-7|CAI79201.1|  197|Caenorhabditis elegans Hypothetical
           protein F52B5.5b protein.
          Length = 197

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = +2

Query: 407 FKISSCVLLSFPSTSKSNPKNYNLRNRHLQCKCASLN 517
           F +++      PSTS S+P N N R R L  +C S N
Sbjct: 2   FNVTNTTAQMEPSTSYSSPSNSNNRKRFLN-ECDSPN 37


>Z73972-2|CAA98258.1|  316|Caenorhabditis elegans Hypothetical
           protein F15H10.2 protein.
          Length = 316

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = +1

Query: 19  PYLPGSPSGSSNQLRRQHRGKESVCDRCPRYQRSP 123
           P  PG+P  +    +    G E  CD CP  + +P
Sbjct: 280 PGAPGAPGQAGAPGQDGESGSEGACDHCPPPRTAP 314


>Z73972-1|CAA98257.1|  316|Caenorhabditis elegans Hypothetical
           protein F15H10.1 protein.
          Length = 316

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = +1

Query: 19  PYLPGSPSGSSNQLRRQHRGKESVCDRCPRYQRSP 123
           P  PG+P  +    +    G E  CD CP  + +P
Sbjct: 280 PGAPGAPGQAGAPGQDGESGSEGACDHCPPPRTAP 314


>X51623-1|CAA35955.1|  316|Caenorhabditis elegans collagen protein.
          Length = 316

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = +1

Query: 19  PYLPGSPSGSSNQLRRQHRGKESVCDRCPRYQRSP 123
           P  PG+P  +    +    G E  CD CP  + +P
Sbjct: 280 PGAPGAPGQAGAPGQDGESGSEGACDHCPPPRTAP 314


>X51622-1|CAA35954.1|  316|Caenorhabditis elegans collagen protein.
          Length = 316

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = +1

Query: 19  PYLPGSPSGSSNQLRRQHRGKESVCDRCPRYQRSP 123
           P  PG+P  +    +    G E  CD CP  + +P
Sbjct: 280 PGAPGAPGQAGAPGQDGESGSEGACDHCPPPRTAP 314


>U41026-6|AAA82353.1| 1081|Caenorhabditis elegans Hypothetical
           protein C28G1.4 protein.
          Length = 1081

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 15/55 (27%), Positives = 25/55 (45%)
 Frame = +2

Query: 356 ICGRVLPQTRALSLEYTFKISSCVLLSFPSTSKSNPKNYNLRNRHLQCKCASLNI 520
           + GR  P+     LE +FK S C  +   +    + K   L +R+ QC   + N+
Sbjct: 791 VLGRGFPERNYRCLECSFKTSDCDAMQLHTYYHKSSK---LEDRNFQCSECTFNV 842


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,970,930
Number of Sequences: 27780
Number of extensions: 254320
Number of successful extensions: 680
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 658
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 680
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1049512662
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)