Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00217
         (531 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    27   0.12 
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    26   0.21 
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        24   1.1  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        24   1.1  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        24   1.1  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   3.4  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    22   4.5  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   7.9  

>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 27.1 bits (57), Expect = 0.12
 Identities = 12/55 (21%), Positives = 21/55 (38%)
 Frame = -3

Query: 220 DHCRHYLFPEFRFTLFDCGHNHVPGTGRRQSVQATFDTLDSDHIQILCPCVVGAV 56
           D C  Y +    +T  DCG    P   +R   Q   + +  +    + P V+  +
Sbjct: 471 DQCEEYEYVHDEYTCMDCGPGKWPHEDKRGCYQLAINHIRWNSAFAIAPAVISCL 525


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 26.2 bits (55), Expect = 0.21
 Identities = 12/55 (21%), Positives = 21/55 (38%)
 Frame = -3

Query: 220 DHCRHYLFPEFRFTLFDCGHNHVPGTGRRQSVQATFDTLDSDHIQILCPCVVGAV 56
           D C  Y +    +T  DCG    P   +R   Q   + +  +    + P V+  +
Sbjct: 561 DQCEEYEYVYDEYTCMDCGPGKWPHEDKRGCYQLAINHIRWNSAFAIAPAVISCL 615


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 11/41 (26%), Positives = 20/41 (48%)
 Frame = +3

Query: 375 LKRELYRLNIRLRLVAAFYFPFLVHQNQTRKIIICVIDIYN 497
           L+  ++ L + +  V +F F      +  R   ICV +IY+
Sbjct: 3   LRCNIWTLAVNVLFVNSFLFVIAAQDSSGRIFTICVPEIYS 43


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 11/41 (26%), Positives = 20/41 (48%)
 Frame = +3

Query: 375 LKRELYRLNIRLRLVAAFYFPFLVHQNQTRKIIICVIDIYN 497
           L+  ++ L + +  V +F F      +  R   ICV +IY+
Sbjct: 3   LRCNIWTLAVNVLFVNSFLFVIAAQDSSGRIFTICVPEIYS 43


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 11/41 (26%), Positives = 20/41 (48%)
 Frame = +3

Query: 375 LKRELYRLNIRLRLVAAFYFPFLVHQNQTRKIIICVIDIYN 497
           L+  ++ L + +  V +F F      +  R   ICV +IY+
Sbjct: 3   LRCNIWTLAVNVLFVNSFLFVIAAQDSSGRIFTICVPEIYS 43


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 10/35 (28%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = +3

Query: 144 VPGT*LWPQSKRVNLNSGKR--*CRQWSSGSGNRS 242
           +P T LW ++ R+ +++ K+    + WS  S N +
Sbjct: 439 IPSTTLWQRAHRLGIDTPKKDGPTKSWSDESLNNA 473


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 10/38 (26%), Positives = 19/38 (50%)
 Frame = +2

Query: 401 YTFKISSCVLLSFPSTSKSNPKNYNLRNRHLQCKCASL 514
           YT  +++ ++L  P T  +   +  LRN      CA++
Sbjct: 654 YTANLAAFLVLERPKTKLTGINDARLRNTMENLTCATV 691


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -1

Query: 198  FRSSGLPFLTVATIMSPEPAAGSLFRRPLIP 106
            F  S +PF++   I++  P +     RP+IP
Sbjct: 1034 FHYSVVPFVSNHDILNLRPLSMEKGTRPMIP 1064


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,144
Number of Sequences: 438
Number of extensions: 3335
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14968302
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)