Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00217
         (531 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g04400.1 68416.m00466 60S ribosomal protein L23 (RPL23C) simi...   144   4e-35
At2g33370.1 68415.m04090 60S ribosomal protein L23 (RPL23B)           144   4e-35
At1g04480.1 68414.m00439 60S ribosomal protein L23 (RPL23A) iden...   144   4e-35
At1g17560.1 68414.m02163 ribosomal protein L14 family protein si...    39   0.002
At5g46160.2 68418.m05678 ribosomal protein L14 family protein / ...    37   0.007
At5g46160.1 68418.m05677 ribosomal protein L14 family protein / ...    37   0.007
At5g61780.1 68418.m07753 tudor domain-containing protein / nucle...    29   2.0  
At1g48700.1 68414.m05450 oxidoreductase, 2OG-Fe(II) oxygenase-re...    27   6.0  
At4g24890.1 68417.m03562 calcineurin-like phosphoesterase family...    27   7.9  

>At3g04400.1 68416.m00466 60S ribosomal protein L23 (RPL23C) similar
           to ribosomal protein L17 GB:AAA34113.1 from [Nicotiana
           tabacum]
          Length = 140

 Score =  144 bits (348), Expect = 4e-35
 Identities = 63/82 (76%), Positives = 77/82 (93%)
 Frame = +2

Query: 8   GRKFRISLGLPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVATVKKGKP 187
           G KFR+SLGLPV A +NCADNTGAKNLY+I+V+GIKGRLNRLP+A  GDM++ATVKKGKP
Sbjct: 11  GNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKP 70

Query: 188 ELRKKVMPAVVIRQRKPFRRRD 253
           +LRKKV+PAV++RQRKP+RR+D
Sbjct: 71  DLRKKVLPAVIVRQRKPWRRKD 92



 Score = 79.8 bits (188), Expect = 1e-15
 Identities = 34/38 (89%), Positives = 36/38 (94%)
 Frame = +1

Query: 256 VFIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 369
           VF+YFEDNAGVIVN KGEMKGSAITGP+ KECADLWPR
Sbjct: 94  VFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPR 131


>At2g33370.1 68415.m04090 60S ribosomal protein L23 (RPL23B)
          Length = 140

 Score =  144 bits (348), Expect = 4e-35
 Identities = 63/82 (76%), Positives = 77/82 (93%)
 Frame = +2

Query: 8   GRKFRISLGLPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVATVKKGKP 187
           G KFR+SLGLPV A +NCADNTGAKNLY+I+V+GIKGRLNRLP+A  GDM++ATVKKGKP
Sbjct: 11  GNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKP 70

Query: 188 ELRKKVMPAVVIRQRKPFRRRD 253
           +LRKKV+PAV++RQRKP+RR+D
Sbjct: 71  DLRKKVLPAVIVRQRKPWRRKD 92



 Score = 79.8 bits (188), Expect = 1e-15
 Identities = 34/38 (89%), Positives = 36/38 (94%)
 Frame = +1

Query: 256 VFIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 369
           VF+YFEDNAGVIVN KGEMKGSAITGP+ KECADLWPR
Sbjct: 94  VFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPR 131


>At1g04480.1 68414.m00439 60S ribosomal protein L23 (RPL23A)
           identical to GB:AAB80655
          Length = 140

 Score =  144 bits (348), Expect = 4e-35
 Identities = 63/82 (76%), Positives = 77/82 (93%)
 Frame = +2

Query: 8   GRKFRISLGLPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVATVKKGKP 187
           G KFR+SLGLPV A +NCADNTGAKNLY+I+V+GIKGRLNRLP+A  GDM++ATVKKGKP
Sbjct: 11  GNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKP 70

Query: 188 ELRKKVMPAVVIRQRKPFRRRD 253
           +LRKKV+PAV++RQRKP+RR+D
Sbjct: 71  DLRKKVLPAVIVRQRKPWRRKD 92



 Score = 79.8 bits (188), Expect = 1e-15
 Identities = 34/38 (89%), Positives = 36/38 (94%)
 Frame = +1

Query: 256 VFIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 369
           VF+YFEDNAGVIVN KGEMKGSAITGP+ KECADLWPR
Sbjct: 94  VFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPR 131


>At1g17560.1 68414.m02163 ribosomal protein L14 family protein
           similar to GB:Z98756 from (Mycobacterium leprae)
          Length = 196

 Score = 39.1 bits (87), Expect = 0.002
 Identities = 20/57 (35%), Positives = 35/57 (61%)
 Frame = +2

Query: 35  LPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVATVKKGKPELRKKV 205
           + +G ++ C DN+ AK   V+ +Q ++G+      A  GD+IV +VK+  P ++KKV
Sbjct: 49  IQMGTILKCVDNSCAKE--VMCIQSLRGK----KGARLGDIIVGSVKEANPIVQKKV 99


>At5g46160.2 68418.m05678 ribosomal protein L14 family protein /
           huellenlos paralog (HLP) contains Pfam profile PF00238:
           Ribosomal protein L14p/L23e; identical to cDNA
           HUELLENLOS PARALOG (HLP) nuclear gene for mitochondrial
           product GU:18140859
          Length = 172

 Score = 37.1 bits (82), Expect = 0.007
 Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 3/67 (4%)
 Frame = +2

Query: 35  LPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVATVKKGKPELRKK---V 205
           + +G V+   DN+GAK   V+ +Q +KG+      A  GD IVA+VK+  P  + K   V
Sbjct: 47  IQMGTVLKVVDNSGAKK--VMCIQALKGK----KGARLGDTIVASVKEAMPNGKVKKGAV 100

Query: 206 MPAVVIR 226
           +  VV+R
Sbjct: 101 VYGVVVR 107


>At5g46160.1 68418.m05677 ribosomal protein L14 family protein /
           huellenlos paralog (HLP) contains Pfam profile PF00238:
           Ribosomal protein L14p/L23e; identical to cDNA
           HUELLENLOS PARALOG (HLP) nuclear gene for mitochondrial
           product GU:18140859
          Length = 173

 Score = 37.1 bits (82), Expect = 0.007
 Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 3/67 (4%)
 Frame = +2

Query: 35  LPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVATVKKGKPELRKK---V 205
           + +G V+   DN+GAK   V+ +Q +KG+      A  GD IVA+VK+  P  + K   V
Sbjct: 48  IQMGTVLKVVDNSGAKK--VMCIQALKGK----KGARLGDTIVASVKEAMPNGKVKKGAV 101

Query: 206 MPAVVIR 226
           +  VV+R
Sbjct: 102 VYGVVVR 108


>At5g61780.1 68418.m07753 tudor domain-containing protein / nuclease
           family protein contains Pfam domains PF00567: Tudor
           domain and PF00565: Staphylococcal nuclease homologue
          Length = 985

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 14/30 (46%), Positives = 15/30 (50%)
 Frame = -3

Query: 211 RHYLFPEFRFTLFDCGHNHVPGTGRRQSVQ 122
           R YL PEF+F          P  GRRQS Q
Sbjct: 204 RVYLLPEFQFVQVFVAGLQAPSMGRRQSTQ 233


>At1g48700.1 68414.m05450 oxidoreductase, 2OG-Fe(II)
           oxygenase-related contains weak hit to Pfam PF03171:
           oxidoreductase, 2OG-Fe(II) oxygenase family
          Length = 286

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 14/50 (28%), Positives = 21/50 (42%)
 Frame = -3

Query: 226 PDDHCRHYLFPEFRFTLFDCGHNHVPGTGRRQSVQATFDTLDSDHIQILC 77
           PD+  ++  FPE   T+FD  +      G  +     F   DSD    +C
Sbjct: 117 PDNTSKYVFFPEVCGTMFDSHYGFFIENGEDRDADVGFHVEDSDITLNVC 166


>At4g24890.1 68417.m03562 calcineurin-like phosphoesterase family
           protein contains Pfam profile: PF00149 calcineurin-like
           phosphoesterase
          Length = 615

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -2

Query: 167 WPQSCPRNRPPAVCSGDL*YLGQRSHTD 84
           WP S  + + P +CS  + Y+   SH D
Sbjct: 96  WPTSGGKEKTPYICSSPIKYMYCNSHPD 123


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,309,864
Number of Sequences: 28952
Number of extensions: 238150
Number of successful extensions: 721
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 700
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 721
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 987020800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)