Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00216
         (764 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter Itr1|Schizo...    28   1.7  
SPBC16A3.05c |rae1||RNA export factor Rae1|Schizosaccharomyces p...    26   6.8  
SPBC4F6.09 |str1||siderophore-iron transporter Str1 |Schizosacch...    26   6.8  
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma...    26   6.8  
SPCC18.13 |||tRNA |Schizosaccharomyces pombe|chr 3|||Manual            25   9.0  
SPCC4G3.05c |mus81||Holliday junction resolvase subunit Mus81|Sc...    25   9.0  

>SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter
           Itr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 575

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +3

Query: 156 GRMYLAQVTTWKALASVVSCKISFH 230
           GR  L  +T W  +A+++ C ++FH
Sbjct: 399 GRRILLLLTVWGMIAALIVCAVAFH 423


>SPBC16A3.05c |rae1||RNA export factor Rae1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 352

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +3

Query: 636 GHVFNKSDVPNHVLLHKV 689
           G+ FN + +PN ++LH V
Sbjct: 322 GYTFNNAQLPNKIMLHPV 339


>SPBC4F6.09 |str1||siderophore-iron transporter Str1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 612

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +1

Query: 601 LKFRLCRPRGMAAMCSTNRTFRITFCCTRLAFY 699
           L FRL R   + A C+ +  F ITF C    +Y
Sbjct: 358 LPFRLMREPTIGACCAMSFLFYITFYCWDNYYY 390


>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1000

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = -3

Query: 441 IKESIYKNSYTIDNGKTNATKENSNIV 361
           + + + K+S TI+N  +N +K+N N+V
Sbjct: 682 VVDFLLKHSKTIENVSSNFSKKNRNVV 708


>SPCC18.13 |||tRNA |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 421

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +2

Query: 122 IVMSVILQIFKRKDVLSASHNLESLSFCR 208
           +V+SVIL IFKR+ V  A   +  L F +
Sbjct: 279 MVVSVILPIFKRQLVAFACEGMAGLIFAK 307


>SPCC4G3.05c |mus81||Holliday junction resolvase subunit
           Mus81|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 608

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +3

Query: 159 RMYLAQVTTW-KALASVVSCKISFHRISIELS 251
           R +     TW KA  S+ SC I+FHR S  L+
Sbjct: 21  RRFPKSYQTWRKAYDSMKSCPITFHRPSQALA 52


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,814,611
Number of Sequences: 5004
Number of extensions: 52882
Number of successful extensions: 135
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)