Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00216
         (764 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0635 - 5091381-5091562,5092800-5092866,5093079-5093960           29   4.1  
07_03_1739 - 29148685-29149017,29149564-29149726,29149844-291500...    28   7.1  
03_05_0781 + 27654764-27655429,27655902-27656004,27656535-276565...    28   7.1  
04_04_1677 + 35306232-35306328,35306697-35307248,35307324-353076...    28   9.4  

>11_01_0635 - 5091381-5091562,5092800-5092866,5093079-5093960
          Length = 376

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = +3

Query: 603 KIPPVPPSRNGGHVFNKSDVPNHVLLHKVSFLPLQ 707
           K+P   P   GG      D+P+ VL H +SFLP Q
Sbjct: 5   KMPKESPGSTGGDRIG--DLPDEVLHHVLSFLPAQ 37


>07_03_1739 -
           29148685-29149017,29149564-29149726,29149844-29150028,
           29150708-29150977
          Length = 316

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 13/32 (40%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = -2

Query: 637 PPFR-EGGTGGILISRTSARDFAGCAGASSTP 545
           PP+   GG+GG++   +SA  ++G  G+SS P
Sbjct: 44  PPYGGAGGSGGLVRPPSSAAGYSGGGGSSSPP 75


>03_05_0781 +
           27654764-27655429,27655902-27656004,27656535-27656590,
           27656895-27657059,27657078-27657083,27657657-27657770,
           27658170-27658262
          Length = 400

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
 Frame = +3

Query: 549 VELAPAHPAKSRADVLLIKIPPVP--PSRNG 635
           + L P  P + R  + L+K PP P  PSR G
Sbjct: 17  LSLPPRRPVQPRGGIFLLKPPPPPPFPSRRG 47


>04_04_1677 +
           35306232-35306328,35306697-35307248,35307324-35307608,
           35308035-35308296,35308378-35308430,35308520-35308587,
           35310331-35310420,35310502-35310586,35310822-35311254,
           35312872-35313439,35313527-35314000
          Length = 988

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 10/24 (41%), Positives = 18/24 (75%)
 Frame = +2

Query: 326 RRCQFYVYFPVSTMLLFSFVAFVL 397
           +RC++++ F +  ++LFSF A VL
Sbjct: 794 KRCKYFLIFVLGFVVLFSFFALVL 817


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,233,812
Number of Sequences: 37544
Number of extensions: 355777
Number of successful extensions: 887
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 864
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 887
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2051430072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)