Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00216
         (764 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4548| Best HMM Match : WD40 (HMM E-Value=6.7e-35)                   29   3.1  
SB_53781| Best HMM Match : Keratin_B2 (HMM E-Value=0.16)               29   5.4  
SB_37759| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  
SB_54897| Best HMM Match : DUF161 (HMM E-Value=4.6)                    28   7.2  

>SB_4548| Best HMM Match : WD40 (HMM E-Value=6.7e-35)
          Length = 844

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 18/44 (40%), Positives = 24/44 (54%)
 Frame = -2

Query: 157 PFKYLQYHRHNYPHTTIITIVSAIDGSLHNTTGKPNLSNLTRNP 26
           P KY Q H H+   + ++++  A  GS   TTGK NL N  R P
Sbjct: 542 PDKY-QLHLHD---SCVLSLKFAYSGSWFITTGKDNLLNAWRTP 581


>SB_53781| Best HMM Match : Keratin_B2 (HMM E-Value=0.16)
          Length = 561

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = +1

Query: 307 RLNEVDATLPV-LRLFPRFNDVAVLLCCICFAIVYCVAIFINRLFNFNNKISFWL 468
           R+++ DAT  +   L      V+    C+ F  +  VA+F N   NF  +  FWL
Sbjct: 130 RISQSDATFVLTFWLSSTARAVSDKKLCVLFGTLTFVALFFNDESNFTYEFKFWL 184


>SB_37759| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 253

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -2

Query: 145 LQYHRHNYPHTTIITIVSAIDGSLHNTT 62
           + Y RH+YPH + + I + +  +L  TT
Sbjct: 80  INYPRHHYPHISTLVITTLVTTTLVTTT 107


>SB_54897| Best HMM Match : DUF161 (HMM E-Value=4.6)
          Length = 375

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 7/62 (11%)
 Frame = -2

Query: 250 DNSILIR*KLILQLTTEAKAFQVVTCAKYILP-------FKYLQYHRHNYPHTTIITIVS 92
           DN I I   +I+   T +    V+     I+        ++Y Q   H+Y HTT I I +
Sbjct: 2   DNDITINTTIIIVNITTSVTITVIIVTTIIITKSPPLSLYRYYQQRHHHYKHTTKIDITT 61

Query: 91  AI 86
            I
Sbjct: 62  TI 63


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,502,931
Number of Sequences: 59808
Number of extensions: 416246
Number of successful extensions: 1057
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 961
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1056
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2072022557
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)