Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00216
         (764 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090812-2|BAC57900.1| 1173|Anopheles gambiae reverse transcript...    25   1.9  
AB090823-2|BAC57922.1| 1154|Anopheles gambiae reverse transcript...    25   2.6  
AB090816-2|BAC57908.1| 1201|Anopheles gambiae reverse transcript...    24   4.5  
AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein.            24   5.9  
AB090813-2|BAC57902.1| 1099|Anopheles gambiae reverse transcript...    23   7.8  

>AB090812-2|BAC57900.1| 1173|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1173

 Score = 25.4 bits (53), Expect = 1.9
 Identities = 18/54 (33%), Positives = 25/54 (46%)
 Frame = +3

Query: 546 GVELAPAHPAKSRADVLLIKIPPVPPSRNGGHVFNKSDVPNHVLLHKVSFLPLQ 707
           G +LA     + RADVLL+     PP+ NG   +   D    V +   S  P+Q
Sbjct: 37  GQDLALQAAREHRADVLLLSDIYRPPANNGRWAY---DAAKSVAVVATSSYPIQ 87


>AB090823-2|BAC57922.1| 1154|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1154

 Score = 25.0 bits (52), Expect = 2.6
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +3

Query: 546 GVELAPAHPAKSRADVLLIKIPPVPPSRNGGHVFNKS 656
           G  LA     + RADVL++     PP+ NG   F+ S
Sbjct: 17  GQGLALQSAREHRADVLILSDMFTPPNNNGRWEFDAS 53


>AB090816-2|BAC57908.1| 1201|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1201

 Score = 24.2 bits (50), Expect = 4.5
 Identities = 17/54 (31%), Positives = 23/54 (42%)
 Frame = +3

Query: 546 GVELAPAHPAKSRADVLLIKIPPVPPSRNGGHVFNKSDVPNHVLLHKVSFLPLQ 707
           G  LA     + RAD+LL+     PP  NG   +   DV   V +      P+Q
Sbjct: 80  GQALALQAAREHRADILLLSDMHRPPENNGRWAY---DVSKKVAVVATGSYPIQ 130


>AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein.
          Length = 3361

 Score = 23.8 bits (49), Expect = 5.9
 Identities = 14/47 (29%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = +3

Query: 555 LAPAHPAKSRADVLLIKIPPVPPSR-NGGHVFNKSDVPNHVLLHKVS 692
           + PA+P  S     LI IP + P+R + G + ++ D+ +  +LH ++
Sbjct: 377 IVPANPVISTEQKELIPIPEIIPNRYHAGWLHDQLDMGS--MLHPIN 421


>AB090813-2|BAC57902.1| 1099|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1099

 Score = 23.4 bits (48), Expect = 7.8
 Identities = 16/44 (36%), Positives = 20/44 (45%)
 Frame = +3

Query: 576 KSRADVLLIKIPPVPPSRNGGHVFNKSDVPNHVLLHKVSFLPLQ 707
           + R DVLL+     PP+ NG   F   D    V +     LPLQ
Sbjct: 28  EKRVDVLLLLELYRPPANNGRWAF---DCSKKVAIVATGSLPLQ 68


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 730,541
Number of Sequences: 2352
Number of extensions: 13914
Number of successful extensions: 64
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 79418373
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)