Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00216
         (764 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23147-1|AAC46692.2|  674|Caenorhabditis elegans Hypothetical pr...    23   7.0  
U40028-4|AAA81115.1|  758|Caenorhabditis elegans Hypothetical pr...    28   8.4  
U29097-10|AAA68414.1|  348|Caenorhabditis elegans Serpentine rec...    28   8.4  

>U23147-1|AAC46692.2|  674|Caenorhabditis elegans Hypothetical
           protein C18H9.8 protein.
          Length = 674

 Score = 23.4 bits (48), Expect(2) = 7.0
 Identities = 8/9 (88%), Positives = 9/9 (100%)
 Frame = +3

Query: 609 PPVPPSRNG 635
           PPVPPSR+G
Sbjct: 103 PPVPPSRSG 111



 Score = 23.0 bits (47), Expect(2) = 7.0
 Identities = 8/9 (88%), Positives = 9/9 (100%)
 Frame = +3

Query: 612 PVPPSRNGG 638
           PVPPSR+GG
Sbjct: 114 PVPPSRSGG 122


>U40028-4|AAA81115.1|  758|Caenorhabditis elegans Hypothetical
           protein T05A7.6 protein.
          Length = 758

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 16/63 (25%), Positives = 30/63 (47%)
 Frame = -3

Query: 549 RHAISFTRIKFWSCDVCHRVLCLMYKLQPK*DFIIKIKESIYKNSYTIDNGKTNATKENS 370
           +H  + T +K + C       C   K Q + D    ++  +Y   Y +DNG  +  +EN+
Sbjct: 259 KHVTARTNVKMYGCGRFANRACQGSKDQGRKD---DLESWVYTLFYLMDNGSLSWKRENN 315

Query: 369 NIV 361
           ++V
Sbjct: 316 SLV 318


>U29097-10|AAA68414.1|  348|Caenorhabditis elegans Serpentine
           receptor, class a (alpha)protein 29 protein.
          Length = 348

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 11/24 (45%), Positives = 19/24 (79%)
 Frame = +1

Query: 394 FAIVYCVAIFINRLFNFNNKISFW 465
           F+  YCV++F++RLF+ N + SF+
Sbjct: 116 FSSFYCVSLFLDRLFSLNPR-SFY 138


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,839,559
Number of Sequences: 27780
Number of extensions: 307600
Number of successful extensions: 840
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 821
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 840
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1830096852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)