Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00216
         (764 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g57300.1 68416.m06378 transcriptional activator, putative sim...    29   2.6  
At1g26797.1 68414.m03263 self-incompatibility protein-related si...    29   4.5  

>At3g57300.1 68416.m06378 transcriptional activator, putative similar
            to transcriptional activator SRCAP [Homo sapiens]
            GI:5106572; contains Pfam profiles PF00271: Helicase
            conserved C-terminal domain, PF00176: SNF2 family
            N-terminal domain
          Length = 1507

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -3

Query: 591  HPLVTSLDAPVPVLRHAISFTRIKFWSC 508
            HPL+  +D+ +PV++ A+  T   F SC
Sbjct: 1163 HPLIQEIDSELPVVQPALQLTHRIFGSC 1190


>At1g26797.1 68414.m03263 self-incompatibility protein-related
           similar to S3 self-incompatibility protein [Papaver
           rhoeas] GI:1107841
          Length = 140

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = -3

Query: 759 RDDRQRSISRQCLRYCTTAAVKS*PCATKRDSERPIC 649
           RDD  +S S  C R C     ++ PC  +RD   P C
Sbjct: 100 RDDSSKSTSGIC-RECIWYICETGPCRARRDGGDPFC 135


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,658,802
Number of Sequences: 28952
Number of extensions: 278601
Number of successful extensions: 738
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 719
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 738
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1712086600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)