Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00214
         (734 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F12.06 |||Rho GDP dissociation inhibitor Rdi1 |Schizosaccha...    83   3e-17
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc...    28   1.2  
SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual    26   6.4  
SPAC4G8.05 |ppk14||serine/threonine protein kinase Ppk14 |Schizo...    26   6.4  
SPBPB7E8.01 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   8.5  
SPBC354.05c |sre2||membrane-tethered transcription factor |Schiz...    25   8.5  

>SPAC6F12.06 |||Rho GDP dissociation inhibitor Rdi1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 205

 Score = 83.4 bits (197), Expect = 3e-17
 Identities = 40/96 (41%), Positives = 56/96 (58%)
 Frame = +2

Query: 434 LDRPQKAGIRDKGGCTIPNKDRFYRQREIVHGLKYVQKTYRLGVPVDKMTHMVGSYPPKI 613
           +++ +K G   K G       +F  Q E++ GL+YVQ   R G  VDK + M+GSY P  
Sbjct: 96  VEQIRKKGFTIKEGSEFKIGVKFRVQHEVISGLRYVQTVRRRGFVVDKTSTMIGSYGPSE 155

Query: 614 EIQSYTTPPEDAPSGMMARGSYSVNSLFTDDDKNVH 721
               +T+ P++AP+GM+ARG Y  N  F DDDK VH
Sbjct: 156 TPYDFTSEPDEAPTGMLARGHYEANGKFVDDDKVVH 191



 Score = 41.1 bits (92), Expect = 2e-04
 Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 2/87 (2%)
 Frame = +3

Query: 255 EILAADQEDESLRKYKEALLGQAQAGAVIVEPDDPRKVIVKKLALCVVGR--XXXXXXXX 428
           E +  D EDESL+K+K +L      G      +D R V++ KL+L V GR          
Sbjct: 37  EYMKMDAEDESLQKWKASL---GITGTGYSPSNDRRTVVILKLSLLVDGRDPVDVNMEDA 93

Query: 429 XXXXXXKKQVFVIKEGVQYRIRIDFIV 509
                 +K+ F IKEG +++I + F V
Sbjct: 94  ASVEQIRKKGFTIKEGSEFKIGVKFRV 120


>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
            Apc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1458

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
 Frame = -2

Query: 646  ILGGRCVRLNLNFGGIGADHMSH-LVNWNAQSVGLLHVLQTVHDLALTIKSIL 491
            +L G C  L L F G G       L+N+    + L H+    HD  +T  +++
Sbjct: 1096 VLAGICFSLGLRFAGTGNPKAKEILINFLDSFIRLCHLPAKTHDERVTAVTVI 1148


>SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 684

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 12/19 (63%), Positives = 13/19 (68%)
 Frame = +2

Query: 455 GIRDKGGCTIPNKDRFYRQ 511
           GIRDKGG  I NK+  Y Q
Sbjct: 85  GIRDKGGVEISNKNDPYIQ 103


>SPAC4G8.05 |ppk14||serine/threonine protein kinase Ppk14
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 566

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +2

Query: 161 LENLK*PIHPKRIQRKKKSNPHISHLQ 241
           L + + PI PK     +K NP+ISHL+
Sbjct: 493 LRHTEPPIIPKLAPIDEKGNPNISHLK 519


>SPBPB7E8.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 569

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 10/35 (28%), Positives = 19/35 (54%)
 Frame = +2

Query: 554 RLGVPVDKMTHMVGSYPPKIEIQSYTTPPEDAPSG 658
           R+G  V+ +T +   Y   +  +S +  P+ AP+G
Sbjct: 454 RMGYSVNNLTGVTNEYSESLAKRSLSEKPKTAPTG 488


>SPBC354.05c |sre2||membrane-tethered transcription factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 793

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +1

Query: 241 EKTIERSLLLTKRMSPFGSTRKHCLDKPKQALSL 342
           +K IE + +L KR+S + S  +  L  P Q  SL
Sbjct: 500 KKLIEENKILQKRLSEYTSVIQASLTAPSQPASL 533


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,846,653
Number of Sequences: 5004
Number of extensions: 55427
Number of successful extensions: 153
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)