Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00214
         (734 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0132 - 12166009-12166089,12166197-12166321,12166489-121667...    79   5e-15
02_05_0539 + 29846439-29846711,29846819-29846885,29847832-298480...    74   1e-13
01_06_1776 - 39815634-39815714,39815761-39815927,39816278-398164...    57   1e-08
02_03_0307 + 17546263-17546299,17546522-17548018,17548859-175489...    28   8.8  

>06_02_0132 -
           12166009-12166089,12166197-12166321,12166489-12166710,
           12168194-12168260,12168424-12168741
          Length = 270

 Score = 78.6 bits (185), Expect = 5e-15
 Identities = 36/87 (41%), Positives = 51/87 (58%)
 Frame = +2

Query: 467 KGGCTIPNKDRFYRQREIVHGLKYVQKTYRLGVPVDKMTHMVGSYPPKIEIQSYTTPPED 646
           K G T   K  F     IV GL+Y    ++ G+ VDK   M+G++ P++E  +Y TP E 
Sbjct: 169 KEGSTYRLKFTFSVSSNIVSGLRYTNTVWKAGIRVDKTKEMLGTFSPQLEPYTYVTPEET 228

Query: 647 APSGMMARGSYSVNSLFTDDDKNVHLQ 727
            PSG+ ARGSYS  + F DDD+  +L+
Sbjct: 229 TPSGVFARGSYSAKTKFVDDDRKCYLE 255



 Score = 49.2 bits (112), Expect = 3e-06
 Identities = 32/90 (35%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
 Frame = +3

Query: 252 REILAADQEDESLRKYKEALLGQAQAGAV--IVEPDDPRKVIVKKLALCVVGRXXXXXXX 425
           +E L  D+EDESLR++KE LLG     +V   +EPD    V +  L +   GR       
Sbjct: 99  KEQLEMDKEDESLRRWKEQLLGSVDLNSVGESLEPD----VRITSLCILSPGRPDVLLPL 154

Query: 426 XXXXXXXKKQVFVIKEGVQYRIRIDFIVSA 515
                  K+  F +KEG  YR++  F VS+
Sbjct: 155 PVEPSNSKEPWFTLKEGSTYRLKFTFSVSS 184


>02_05_0539 +
           29846439-29846711,29846819-29846885,29847832-29848050,
           29848200-29848324,29848423-29848503
          Length = 254

 Score = 74.1 bits (174), Expect = 1e-13
 Identities = 35/87 (40%), Positives = 48/87 (55%)
 Frame = +2

Query: 467 KGGCTIPNKDRFYRQREIVHGLKYVQKTYRLGVPVDKMTHMVGSYPPKIEIQSYTTPPED 646
           K G     K  F     IV GL+Y    ++ G+ VD    M+G++ P+ E  +Y TP E 
Sbjct: 153 KEGSLYKLKFTFSVSNNIVSGLRYTNAVWKTGIKVDSHKEMLGTFSPQPEPYTYVTPEET 212

Query: 647 APSGMMARGSYSVNSLFTDDDKNVHLQ 727
            PSGM ARGSYS  + F DDD+  +L+
Sbjct: 213 TPSGMFARGSYSARTKFLDDDRKCYLE 239



 Score = 41.1 bits (92), Expect = 9e-04
 Identities = 30/89 (33%), Positives = 44/89 (49%), Gaps = 2/89 (2%)
 Frame = +3

Query: 252 REILAADQEDESLRKYKEALLGQAQAGAV--IVEPDDPRKVIVKKLALCVVGRXXXXXXX 425
           ++ L  D++DESLR++KE LLG     +V   +EPD    V +  LA+   GR       
Sbjct: 84  KDQLEKDKDDESLRRWKEQLLGSVDLNSVGETLEPD----VKIMSLAILSPGR-PDIFLP 138

Query: 426 XXXXXXXKKQVFVIKEGVQYRIRIDFIVS 512
                  K   F +KEG  Y+++  F VS
Sbjct: 139 LPVEPNAKGVWFTLKEGSLYKLKFTFSVS 167


>01_06_1776 -
           39815634-39815714,39815761-39815927,39816278-39816496,
           39816614-39816680,39816771-39816932
          Length = 231

 Score = 57.2 bits (132), Expect = 1e-08
 Identities = 28/72 (38%), Positives = 39/72 (54%)
 Frame = +2

Query: 467 KGGCTIPNKDRFYRQREIVHGLKYVQKTYRLGVPVDKMTHMVGSYPPKIEIQSYTTPPED 646
           K G T   +  F     IV GLKY    ++ GV V+    M+G++ P++E  +Y    E 
Sbjct: 116 KDGSTYSFRFSFIVSNNIVSGLKYTNTVWKTGVRVENQKVMLGTFSPQLEPYTYEGEEET 175

Query: 647 APSGMMARGSYS 682
            P+GM ARGSYS
Sbjct: 176 TPAGMFARGSYS 187



 Score = 41.5 bits (93), Expect = 7e-04
 Identities = 30/88 (34%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
 Frame = +3

Query: 252 REILAADQEDESLRKYKEALLGQAQAGAVIVEPDDPRKVIVKKLALCVVGRXXXXXXXXX 431
           +E L  D++DESLR++KE LLGQ      + E  +P    VK L L ++           
Sbjct: 47  KEQLELDKDDESLRRWKEQLLGQVDT-EQLGETAEPE---VKVLNLTILSPDRPDLVLPI 102

Query: 432 XXXXXKK-QVFVIKEGVQYRIRIDFIVS 512
                +K   F +K+G  Y  R  FIVS
Sbjct: 103 PFVPDEKGYAFALKDGSTYSFRFSFIVS 130


>02_03_0307 +
           17546263-17546299,17546522-17548018,17548859-17548949,
           17549054-17549621,17550591-17550670,17550993-17551077,
           17551172-17551263,17551355-17551423,17551587-17551655,
           17552217-17552510,17552761-17552797,17552883-17552972,
           17553520-17553585,17553704-17553818,17553902-17553940,
           17554519-17554700
          Length = 1136

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 18/47 (38%), Positives = 22/47 (46%)
 Frame = -2

Query: 655 GRRILGGRCVRLNLNFGGIGADHMSHLVNWNAQSVGLLHVLQTVHDL 515
           GRR LG + VR  LNF G   D   +     A+ +  L  L  VH L
Sbjct: 336 GRRPLGDKSVRRKLNFEGDAVDFEGNREFSRAKLMEDLRCLAKVHGL 382


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,213,597
Number of Sequences: 37544
Number of extensions: 390404
Number of successful extensions: 1167
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1165
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1933531792
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)