Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00214
         (734 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42593| Best HMM Match : Rho_GDI (HMM E-Value=3.7e-17)               74   1e-13
SB_11738| Best HMM Match : SH3_2 (HMM E-Value=3.7e-32)                 29   5.2  
SB_38432| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.8  
SB_6761| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.8  
SB_48238| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.0  
SB_9112| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   9.0  

>SB_42593| Best HMM Match : Rho_GDI (HMM E-Value=3.7e-17)
          Length = 339

 Score = 73.7 bits (173), Expect = 1e-13
 Identities = 32/53 (60%), Positives = 37/53 (69%)
 Frame = +2

Query: 575 KMTHMVGSYPPKIEIQSYTTPPEDAPSGMMARGSYSVNSLFTDDDKNVHLQWE 733
           K + MVGSY PK E   Y TP ++AP GMMARG Y + S F DDDKN HL+WE
Sbjct: 277 KDSFMVGSYGPKFEPHEYLTPIDEAPKGMMARGKYIIRSKFIDDDKNSHLEWE 329



 Score = 32.7 bits (71), Expect = 0.32
 Identities = 18/45 (40%), Positives = 26/45 (57%)
 Frame = +3

Query: 255 EILAADQEDESLRKYKEALLGQAQAGAVIVEPDDPRKVIVKKLAL 389
           EI   D +DE+L KYK+ LLG          P  P+ V+V+K+A+
Sbjct: 32  EIQNLDADDEALVKYKQTLLGVTPEEL----PKGPKNVVVEKVAI 72


>SB_11738| Best HMM Match : SH3_2 (HMM E-Value=3.7e-32)
          Length = 2436

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = +3

Query: 252 REILAADQEDESLRKYKEALLGQAQAGA-VIVEPDDPRKVIVKKLALCVV 398
           R++  +D ED++   YKE   G+  +GA    EPDD    + ++++   +
Sbjct: 782 RQLAMSDSEDDASSSYKEKPAGRRSSGASQNSEPDDDILTLSQRISQAAI 831


>SB_38432| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 601

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +2

Query: 587 MVGSYPPKIEIQSYTTPPEDAPSGMMARGSYSVNSLF 697
           ++ SY   I      TPPE A SGM + G Y+ +  +
Sbjct: 543 VINSYGQYITTAREQTPPEMAASGMASSGQYTSSGTY 579


>SB_6761| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 121

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 17/64 (26%), Positives = 28/64 (43%)
 Frame = +2

Query: 17  RHFFGLKNLETANRCKFYNYLVFKCFFLFRLLVLCKKSFVTCYKKRICLENLK*PIHPKR 196
           + FF  K + T N     N    + FFL     LC +  +  +   ICL ++   I P R
Sbjct: 52  QEFFIDKKMATQNEYASQNKRTERTFFLITKAALCLEYILGRFVVLICLSSVVSAIQPFR 111

Query: 197 IQRK 208
           + ++
Sbjct: 112 LHKE 115


>SB_48238| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 146

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +3

Query: 300 KEALLGQAQAGAVIVEPDDPRKVIVKKLALCVVGR 404
           +E LL +   G  IVEP DP  +I + +A C++ R
Sbjct: 8   REVLL-EGVEGVRIVEPCDPSGLIAENVAHCILSR 41


>SB_9112| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 171

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +3

Query: 300 KEALLGQAQAGAVIVEPDDPRKVIVKKLALCVVGR 404
           +E LL +   G  IVEP DP  +I + +A C++ R
Sbjct: 32  REVLL-EGVEGVRIVEPCDPSGLIAENVAHCILSR 65


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,781,009
Number of Sequences: 59808
Number of extensions: 439954
Number of successful extensions: 924
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 865
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 923
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1974037988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)