Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00214
(734 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40426-5|AAF99947.1| 191|Caenorhabditis elegans Rho gdi protein... 96 3e-20
U36431-1|AAD10299.1| 191|Caenorhabditis elegans Rho GDP dissoci... 96 3e-20
Z48717-1|CAA88603.1| 520|Caenorhabditis elegans Hypothetical pr... 29 3.4
U39472-4|AAK31389.2| 319|Caenorhabditis elegans Helix loop heli... 29 4.5
U39472-3|AAN39683.1| 320|Caenorhabditis elegans Helix loop heli... 29 4.5
U39472-2|AAN39684.1| 324|Caenorhabditis elegans Helix loop heli... 29 4.5
M59940-2|AAA16290.1| 320|Caenorhabditis elegans CeMyoD, alterna... 29 4.5
M59940-1|AAA16289.1| 324|Caenorhabditis elegans CeMyoD protein. 29 4.5
Z48717-2|CAA88604.1| 520|Caenorhabditis elegans Hypothetical pr... 28 6.0
AC024826-8|AAF60795.2| 580|Caenorhabditis elegans Hypothetical ... 28 6.0
AF039049-12|AAB94245.1| 499|Caenorhabditis elegans Cytochrome p... 28 7.9
>U40426-5|AAF99947.1| 191|Caenorhabditis elegans Rho gdi protein 1
protein.
Length = 191
Score = 95.9 bits (228), Expect = 3e-20
Identities = 43/78 (55%), Positives = 53/78 (67%)
Frame = +2
Query: 500 FYRQREIVHGLKYVQKTYRLGVPVDKMTHMVGSYPPKIEIQSYTTPPEDAPSGMMARGSY 679
F+ QREI GL Y K R G+ V+ +M+GSY PK+EIQ Y +P E+APSGMM RG Y
Sbjct: 106 FHVQREITSGLHYKHKVKRSGITVENEKYMMGSYAPKLEIQEYKSPNEEAPSGMMHRGKY 165
Query: 680 SVNSLFTDDDKNVHLQWE 733
V S TDDD NV+L W+
Sbjct: 166 KVYSKITDDDNNVYLDWQ 183
Score = 53.6 bits (123), Expect = 1e-07
Identities = 34/86 (39%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
Frame = +3
Query: 255 EILAADQEDESLRKYKEALLGQAQAGAVIVEPDDPRKVIVKKLALCVVGRXXXXXXXXXX 434
E+L AD+EDESL+ YK LLGQ G VIV+ +P +VIV+ + L + G+
Sbjct: 26 ELLNADKEDESLKVYKAKLLGQ---GTVIVDEKNPLRVIVRSVELLINGKTAQSFDLSDP 82
Query: 435 XXXXKKQVFV-IKEGVQYRIRIDFIV 509
+ V IKEG YR+ F V
Sbjct: 83 AKLVNSDLSVSIKEGSNYRLSFAFHV 108
>U36431-1|AAD10299.1| 191|Caenorhabditis elegans Rho GDP
dissociation inhibitor protein.
Length = 191
Score = 95.9 bits (228), Expect = 3e-20
Identities = 43/78 (55%), Positives = 53/78 (67%)
Frame = +2
Query: 500 FYRQREIVHGLKYVQKTYRLGVPVDKMTHMVGSYPPKIEIQSYTTPPEDAPSGMMARGSY 679
F+ QREI GL Y K R G+ V+ +M+GSY PK+EIQ Y +P E+APSGMM RG Y
Sbjct: 106 FHVQREITSGLHYKHKVKRSGITVENEKYMMGSYAPKLEIQEYKSPNEEAPSGMMHRGKY 165
Query: 680 SVNSLFTDDDKNVHLQWE 733
V S TDDD NV+L W+
Sbjct: 166 KVYSKITDDDNNVYLDWQ 183
Score = 53.6 bits (123), Expect = 1e-07
Identities = 34/86 (39%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
Frame = +3
Query: 255 EILAADQEDESLRKYKEALLGQAQAGAVIVEPDDPRKVIVKKLALCVVGRXXXXXXXXXX 434
E+L AD+EDESL+ YK LLGQ G VIV+ +P +VIV+ + L + G+
Sbjct: 26 ELLNADKEDESLKVYKAKLLGQ---GTVIVDEKNPLRVIVRSVELLINGKTAQSFDLSDP 82
Query: 435 XXXXKKQVFV-IKEGVQYRIRIDFIV 509
+ V IKEG YR+ F V
Sbjct: 83 AKLVNSDLSVSIKEGSNYRLSFAFHV 108
>Z48717-1|CAA88603.1| 520|Caenorhabditis elegans Hypothetical
protein T10B9.1 protein.
Length = 520
Score = 29.1 bits (62), Expect = 3.4
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +2
Query: 476 CTIPNKDRFYRQREIVHGLKYVQKTYRLGVPVDKMTHM 589
C + R Y +VH K ++KT LGV +D+ T++
Sbjct: 378 CVVKEALRMYPLASLVHNRKCMKKTNVLGVEIDEGTNV 415
>U39472-4|AAK31389.2| 319|Caenorhabditis elegans Helix loop helix
protein 1, isoformc protein.
Length = 319
Score = 28.7 bits (61), Expect = 4.5
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 3/80 (3%)
Frame = +2
Query: 479 TIPNKDRFYRQREIVHG-LKYVQKTYRLGVPVDKMTH-MVGSYPPKIEIQSYTTPPED-A 649
T PN ++ + EI+ + Y+ R+ KMT M + ++ Q PP D
Sbjct: 182 TCPNPNQRLPKVEILRSAIDYINNLERMLQQAGKMTKIMEQNQHLQMTQQINGAPPHDYV 241
Query: 650 PSGMMARGSYSVNSLFTDDD 709
S A SY+ ++F DDD
Sbjct: 242 TSSHFASSSYNPENMFDDDD 261
>U39472-3|AAN39683.1| 320|Caenorhabditis elegans Helix loop helix
protein 1, isoforma protein.
Length = 320
Score = 28.7 bits (61), Expect = 4.5
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 3/80 (3%)
Frame = +2
Query: 479 TIPNKDRFYRQREIVHG-LKYVQKTYRLGVPVDKMTH-MVGSYPPKIEIQSYTTPPED-A 649
T PN ++ + EI+ + Y+ R+ KMT M + ++ Q PP D
Sbjct: 178 TCPNPNQRLPKVEILRSAIDYINNLERMLQQAGKMTKIMEQNQHLQMTQQINGAPPHDYV 237
Query: 650 PSGMMARGSYSVNSLFTDDD 709
S A SY+ ++F DDD
Sbjct: 238 TSSHFASSSYNPENMFDDDD 257
>U39472-2|AAN39684.1| 324|Caenorhabditis elegans Helix loop helix
protein 1, isoformb protein.
Length = 324
Score = 28.7 bits (61), Expect = 4.5
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 3/80 (3%)
Frame = +2
Query: 479 TIPNKDRFYRQREIVHG-LKYVQKTYRLGVPVDKMTH-MVGSYPPKIEIQSYTTPPED-A 649
T PN ++ + EI+ + Y+ R+ KMT M + ++ Q PP D
Sbjct: 182 TCPNPNQRLPKVEILRSAIDYINNLERMLQQAGKMTKIMEQNQHLQMTQQINGAPPHDYV 241
Query: 650 PSGMMARGSYSVNSLFTDDD 709
S A SY+ ++F DDD
Sbjct: 242 TSSHFASSSYNPENMFDDDD 261
>M59940-2|AAA16290.1| 320|Caenorhabditis elegans CeMyoD,
alternatively spliced productprotein.
Length = 320
Score = 28.7 bits (61), Expect = 4.5
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 3/80 (3%)
Frame = +2
Query: 479 TIPNKDRFYRQREIVHG-LKYVQKTYRLGVPVDKMTH-MVGSYPPKIEIQSYTTPPED-A 649
T PN ++ + EI+ + Y+ R+ KMT M + ++ Q PP D
Sbjct: 178 TCPNPNQRLPKVEILRSAIDYINNLERMLQQAGKMTKIMEQNQHLQMTQQINGAPPHDYV 237
Query: 650 PSGMMARGSYSVNSLFTDDD 709
S A SY+ ++F DDD
Sbjct: 238 TSSHFASSSYNPENMFDDDD 257
>M59940-1|AAA16289.1| 324|Caenorhabditis elegans CeMyoD protein.
Length = 324
Score = 28.7 bits (61), Expect = 4.5
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 3/80 (3%)
Frame = +2
Query: 479 TIPNKDRFYRQREIVHG-LKYVQKTYRLGVPVDKMTH-MVGSYPPKIEIQSYTTPPED-A 649
T PN ++ + EI+ + Y+ R+ KMT M + ++ Q PP D
Sbjct: 182 TCPNPNQRLPKVEILRSAIDYINNLERMLQQAGKMTKIMEQNQHLQMTQQINGAPPHDYV 241
Query: 650 PSGMMARGSYSVNSLFTDDD 709
S A SY+ ++F DDD
Sbjct: 242 TSSHFASSSYNPENMFDDDD 261
>Z48717-2|CAA88604.1| 520|Caenorhabditis elegans Hypothetical
protein T10B9.2 protein.
Length = 520
Score = 28.3 bits (60), Expect = 6.0
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +2
Query: 476 CTIPNKDRFYRQREIVHGLKYVQKTYRLGVPVDKMTHM 589
C + R Y IVH K +++T LGV ++K T++
Sbjct: 378 CVVKEALRMYPLASIVHNRKCMKETNVLGVQIEKGTNV 415
>AC024826-8|AAF60795.2| 580|Caenorhabditis elegans Hypothetical
protein Y55F3AM.3a protein.
Length = 580
Score = 28.3 bits (60), Expect = 6.0
Identities = 25/77 (32%), Positives = 31/77 (40%), Gaps = 3/77 (3%)
Frame = +1
Query: 505 SSARDRARSEVRAEDL---QTGRSS*QDDSYGRLLSPQN*DSVLHNAPRGCAVRDDGARL 675
SS R R+RS R D + RS +D R SP + RG R R
Sbjct: 47 SSRRSRSRSRDRRGDRGDRRRSRSRSKDRRTTRRRSPSRERRRSRSRDRGAPRRRSRTRS 106
Query: 676 VQRQQPLHRRRQERPPP 726
R++ RRR R PP
Sbjct: 107 RDRRRSPPRRRDRRTPP 123
>AF039049-12|AAB94245.1| 499|Caenorhabditis elegans Cytochrome p450
family protein 35B3 protein.
Length = 499
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +2
Query: 488 NKDRFYRQREIVHGLKYVQKTYRLGVPVDKM-THMVGSYPPKIEIQ 622
NKD F ++I+H + T+ + VPV + T G + +EIQ
Sbjct: 195 NKDEFLHLKKIIHVSSDIFTTFDMTVPVWVLKTFFPGRFARSVEIQ 240
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,915,174
Number of Sequences: 27780
Number of extensions: 320414
Number of successful extensions: 962
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 908
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 960
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1724918872
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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