Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00214
         (734 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    26   0.32 
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    26   0.32 
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    26   0.32 
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    23   3.9  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   6.9  
AB083209-1|BAC54133.1|   87|Apis mellifera hypothetical protein ...    22   6.9  

>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 26.2 bits (55), Expect = 0.32
 Identities = 18/63 (28%), Positives = 29/63 (46%)
 Frame = +3

Query: 186 TRRGYRGRRNQILI*ATSREDHREILAADQEDESLRKYKEALLGQAQAGAVIVEPDDPRK 365
           TRR  R R  Q  I A     HRE   A++   S   + E    ++ A   +++ D+P +
Sbjct: 223 TRRRLRERARQSRINAVQSTRHREADDAEESVSSETNHNERSTPRSHAKPSLID-DEPTE 281

Query: 366 VIV 374
           V +
Sbjct: 282 VTI 284


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 26.2 bits (55), Expect = 0.32
 Identities = 18/63 (28%), Positives = 29/63 (46%)
 Frame = +3

Query: 186 TRRGYRGRRNQILI*ATSREDHREILAADQEDESLRKYKEALLGQAQAGAVIVEPDDPRK 365
           TRR  R R  Q  I A     HRE   A++   S   + E    ++ A   +++ D+P +
Sbjct: 223 TRRRLRERARQSRINAVQSTRHREADDAEESVSSETNHNERSTPRSHAKPSLID-DEPTE 281

Query: 366 VIV 374
           V +
Sbjct: 282 VTI 284


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 26.2 bits (55), Expect = 0.32
 Identities = 18/63 (28%), Positives = 29/63 (46%)
 Frame = +3

Query: 186 TRRGYRGRRNQILI*ATSREDHREILAADQEDESLRKYKEALLGQAQAGAVIVEPDDPRK 365
           TRR  R R  Q  I A     HRE   A++   S   + E    ++ A   +++ D+P +
Sbjct: 223 TRRRLRERARQSRINAVQSTRHREADDAEESVSSETNHNERSTPRSHAKPSLID-DEPTE 281

Query: 366 VIV 374
           V +
Sbjct: 282 VTI 284


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -2

Query: 649 RILGGRCVRLNLNFGG 602
           RIL G  +RL  NFGG
Sbjct: 43  RILDGYDIRLRPNFGG 58


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -1

Query: 497 DPYSVLYTLLYHEYLLFEVGQVPS 426
           D +  L    Y EY ++E+G++ S
Sbjct: 396 DAFKDLQDKYYEEYKMYELGELAS 419


>AB083209-1|BAC54133.1|   87|Apis mellifera hypothetical protein
           protein.
          Length = 87

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -1

Query: 284 LILLVSSKDLSMVFSGGGLY 225
           ++  VSS+D S +F+G G Y
Sbjct: 13  VLATVSSQDYSQLFAGFGPY 32


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,754
Number of Sequences: 438
Number of extensions: 3721
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22901220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)