Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00214
         (734 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g07880.1 68416.m00963 Rho GDP-dissociation inhibitor family p...    74   1e-13
At1g62450.1 68414.m07046 Rho GDP-dissociation inhibitor family p...    68   6e-12
At1g12070.1 68414.m01393 Rho GDP-dissociation inhibitor family p...    62   4e-10
At1g23790.1 68414.m03001 expressed protein                             28   5.6  

>At3g07880.1 68416.m00963 Rho GDP-dissociation inhibitor family
           protein similar to SP|P52565 Rho GDP-dissociation
           inhibitor 1 (Rho GDI 1) (Rho-GDI alpha) {Homo sapiens};
           contains Pfam profile PF02115: RHO protein GDP
           dissociation inhibitor
          Length = 240

 Score = 73.7 bits (173), Expect = 1e-13
 Identities = 34/87 (39%), Positives = 49/87 (56%)
 Frame = +2

Query: 467 KGGCTIPNKDRFYRQREIVHGLKYVQKTYRLGVPVDKMTHMVGSYPPKIEIQSYTTPPED 646
           K G     K  F+    IV GL+Y    ++ GV VD+   M+G++ P++E  ++  P E 
Sbjct: 140 KEGSKYNLKFTFHVNNNIVSGLRYTNTVWKTGVKVDRAKEMLGTFSPQLEPYNHVMPEET 199

Query: 647 APSGMMARGSYSVNSLFTDDDKNVHLQ 727
            PSGM ARGSYS  + F DDD   +L+
Sbjct: 200 TPSGMFARGSYSARTKFLDDDNKCYLE 226



 Score = 42.3 bits (95), Expect = 3e-04
 Identities = 31/87 (35%), Positives = 43/87 (49%)
 Frame = +3

Query: 252 REILAADQEDESLRKYKEALLGQAQAGAVIVEPDDPRKVIVKKLALCVVGRXXXXXXXXX 431
           +E L  D++DESLRK+KE LLG       I E  DP +V +  LA+   GR         
Sbjct: 71  KEHLEKDKDDESLRKWKEQLLGSVDV-TNIGETLDP-EVRIDSLAIISPGR-PDIVLLVP 127

Query: 432 XXXXXKKQVFVIKEGVQYRIRIDFIVS 512
                K   F +KEG +Y ++  F V+
Sbjct: 128 ENGNPKGMWFTLKEGSKYNLKFTFHVN 154


>At1g62450.1 68414.m07046 Rho GDP-dissociation inhibitor family
           protein similar to SP|P52565 Rho GDP-dissociation
           inhibitor 1 (Rho GDI 1) (Rho-GDI alpha) {Homo sapiens};
           contains Pfam profile PF02115: RHO protein GDP
           dissociation inhibitor
          Length = 223

 Score = 68.1 bits (159), Expect = 6e-12
 Identities = 36/99 (36%), Positives = 48/99 (48%)
 Frame = +2

Query: 431 GLDRPQKAGIRDKGGCTIPNKDRFYRQREIVHGLKYVQKTYRLGVPVDKMTHMVGSYPPK 610
           GL  P+      K G        F     IV GL+Y    ++ GV VD    M+G++ P+
Sbjct: 113 GLPNPKGPWFTIKEGSKYTLVFNFRVTNNIVSGLRYNNTVWKTGVKVDSTKAMLGTFSPQ 172

Query: 611 IEIQSYTTPPEDAPSGMMARGSYSVNSLFTDDDKNVHLQ 727
            E   +  P E  PSGM ARGSYS  + F DDD   +L+
Sbjct: 173 AESYQHVMPEEMTPSGMFARGSYSARTKFIDDDNKCYLE 211



 Score = 34.7 bits (76), Expect = 0.064
 Identities = 28/88 (31%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
 Frame = +3

Query: 252 REILAADQEDESLRKYKEALLGQAQAGAVIVEPDDPRKVIVKKLALCVVGRXXXXXXXXX 431
           +E L  D++DESLR++KE LLG      V   PD   K++   L +    R         
Sbjct: 54  KEQLERDKDDESLRRWKEQLLGVVDLEDVGETPDPVVKIL--DLTIRSPDREEMVLTIPE 111

Query: 432 XXXXXKK-QVFVIKEGVQYRIRIDFIVS 512
                 K   F IKEG +Y +  +F V+
Sbjct: 112 DGLPNPKGPWFTIKEGSKYTLVFNFRVT 139


>At1g12070.1 68414.m01393 Rho GDP-dissociation inhibitor family
           protein similar to SP|P52565 Rho GDP-dissociation
           inhibitor 1 (Rho GDI 1) (Rho-GDI alpha) {Homo sapiens};
           contains Pfam profile PF02115: RHO protein GDP
           dissociation inhibitor
          Length = 223

 Score = 62.1 bits (144), Expect = 4e-10
 Identities = 28/70 (40%), Positives = 42/70 (60%)
 Frame = +2

Query: 518 IVHGLKYVQKTYRLGVPVDKMTHMVGSYPPKIEIQSYTTPPEDAPSGMMARGSYSVNSLF 697
           IV GL+Y    ++ G+ V     M+G++ P+ E  ++    E APSG++ RGSYSV S F
Sbjct: 142 IVSGLQYSNTVWKTGIKVYSRKEMLGTFSPQAEPYTHVMFEETAPSGLLVRGSYSVKSKF 201

Query: 698 TDDDKNVHLQ 727
            DDD   +L+
Sbjct: 202 VDDDNQCYLE 211



 Score = 34.7 bits (76), Expect = 0.064
 Identities = 27/88 (30%), Positives = 39/88 (44%), Gaps = 1/88 (1%)
 Frame = +3

Query: 252 REILAADQEDESLRKYKEALLGQAQAGAVIVEPDDPRKVIVKKLALCVVGRXXXXXXXXX 431
           +E L  D++DESLR++KE LLG      V   PD   K++   L +    R         
Sbjct: 54  KEQLEKDKDDESLRRWKEQLLGSVDLEEVGETPDPLVKILT--LTIRSPDREDMVLTIPE 111

Query: 432 XXXXXKK-QVFVIKEGVQYRIRIDFIVS 512
                 K   F +KEG +Y +   F V+
Sbjct: 112 NGKPASKGPWFTLKEGSKYTLIFTFRVT 139


>At1g23790.1 68414.m03001 expressed protein 
          Length = 518

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
 Frame = +1

Query: 217 KSSYKPPPEKTIER----SLLLTKRMSPFGSTRKHCLDKPKQALSLLNRM 354
           K +  PPP     R    SLL  +R +P  +++   L+KP+++LSL  R+
Sbjct: 246 KKNDSPPPSVRTRRATAASLLEDEREAPKSTSKYSKLEKPEKSLSLPGRL 295


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,101,185
Number of Sequences: 28952
Number of extensions: 300972
Number of successful extensions: 795
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 777
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 795
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1614253080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)