Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00213
         (777 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11E3.07 |vma4||V-type ATPase subunit E|Schizosaccharomyces p...    53   5e-08
SPBC3B9.09 |vps36||RBZ zinc finger protein Vps36|Schizosaccharom...    31   0.24 
SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M...    26   5.2  
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||...    26   5.2  
SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyc...    26   5.2  
SPAC637.06 |||alpha-1,2-galactosyltransferase |Schizosaccharomyc...    26   6.9  

>SPAC11E3.07 |vma4||V-type ATPase subunit E|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 227

 Score = 52.8 bits (121), Expect = 5e-08
 Identities = 30/84 (35%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
 Frame = +2

Query: 2   ELLVTLIVQALFQLMEPTVTIRVRQTDKALVESLLGKAQTDYKNKIKK-DVVLKVDTENF 178
           + +  LIVQA+  L EP   +  RQ D  +V++ + KA    K+K    D  L  +T++F
Sbjct: 114 KFMADLIVQAMELLGEPVGIVYSRQRDAEIVKAAIPKATEVLKSKNGSIDYELDAETDDF 173

Query: 179 LSPDTCGGIELVAARGRIKISNTL 250
           L+    GG+ LV   G+I++ NTL
Sbjct: 174 LNDSVLGGVVLVGLGGKIRVDNTL 197



 Score = 42.7 bits (96), Expect = 6e-05
 Identities = 17/26 (65%), Positives = 21/26 (80%)
 Frame = +1

Query: 256 RLELIAQQLLPEIRNALFGRNPNRKF 333
           RLE++ ++ LPEIR  LFG NPNRKF
Sbjct: 200 RLEIVKEEALPEIRRLLFGENPNRKF 225


>SPBC3B9.09 |vps36||RBZ zinc finger protein
           Vps36|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 467

 Score = 30.7 bits (66), Expect = 0.24
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = -2

Query: 197 HRCRATKSS-RCRLSTQHPS*SYSCSLFGLFRAGTPPEPCR 78
           H  R  +SS + RLS +H   S++C +      G P  PCR
Sbjct: 77  HTSRYFRSSPKIRLSLRHVEKSWACKICTFINVGDPINPCR 117


>SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1052

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 5/56 (8%)
 Frame = +2

Query: 44  MEPTVTIRVR-----QTDKALVESLLGKAQTDYKNKIKKDVVLKVDTENFLSPDTC 196
           +E T+TI V        DK   E+ LGK   D  N  + DV+  V  E   + D C
Sbjct: 782 IENTLTIPVEVEHSDNIDKGSEENDLGKEAVDEANNNQNDVLESVVVEQSTTTDDC 837


>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1157

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +1

Query: 523 MFPLTLQEMCNRVTLNISDS*AFRCAHSTFNC 618
           +  LTL+ MCN     I  S A   +H  F+C
Sbjct: 865 LLQLTLRRMCNESEYTIGTSNAKDVSHFVFSC 896


>SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 835

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = -3

Query: 253 LQSVADLDTSPGCNQLDSTTGVGRQKVLGVDFQHNILLDLIL 128
           LQ V+ +  SP    L     VG+ +V+  DF    LLDL L
Sbjct: 223 LQHVSHISISPNARYLALYESVGKVRVISSDFSKE-LLDLRL 263


>SPAC637.06 |||alpha-1,2-galactosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 347

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = -3

Query: 223 PGC-NQLDSTTGVGRQKVLGVDFQHNILLDLILVVCLGF 110
           PG  N LDS  G  R+K       H + + ++L++C G+
Sbjct: 22  PGTSNVLDSKEGDTRRKYFTKTHLHRLFVFVVLLLCSGY 60


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,263,014
Number of Sequences: 5004
Number of extensions: 69692
Number of successful extensions: 166
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)