Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00213
(777 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0134 + 26805329-26805430,26807130-26807230,26807876-268080... 46 3e-05
05_05_0231 + 23488588-23488689,23488775-23488875,23489012-234891... 45 8e-05
01_01_0858 - 6699126-6699128,6699219-6699318,6700052-6700278,670... 44 1e-04
11_01_0300 + 2253957-2254245,2254783-2254850,2254967-2255098,225... 31 1.3
09_02_0115 + 4413714-4414475 30 1.8
03_04_0095 + 17266595-17266741,17267235-17267807 29 3.1
06_02_0090 + 11604017-11604082,11604345-11604397,11604710-11605229 29 5.4
11_06_0042 + 19550260-19550278,19550418-19550530,19551841-195520... 28 7.2
06_01_0023 + 227014-227166,227893-228001,228096-228157,228284-22... 28 7.2
03_06_0108 + 31708713-31709079,31709258-31709822,31709933-317100... 28 7.2
03_05_0697 + 26888791-26888861,26890468-26890579,26891561-268917... 28 7.2
>01_06_0134 +
26805329-26805430,26807130-26807230,26807876-26808032,
26808386-26808582,26809188-26809287,26809501-26809536
Length = 230
Score = 46.0 bits (104), Expect = 3e-05
Identities = 33/94 (35%), Positives = 49/94 (52%), Gaps = 11/94 (11%)
Frame = +2
Query: 5 LLVTLIVQALFQLMEPTVTIRVRQTDKALVESLLGKAQTDYKNKIK-KDVVLKVDTENFL 181
LL L+VQ L +L EP V +R R+ D VES+L A+ +Y +K + + VD + +L
Sbjct: 113 LLKELVVQGLLRLKEPAVLLRCRKEDHHHVESVLHSAKNEYASKAEVHHPEILVDHDVYL 172
Query: 182 SPDT---------C-GGIELVAARGRIKISNTLE 253
P C GG+ L + G+I NTL+
Sbjct: 173 PPSPSSHDSHERFCSGGVVLASRDGKIVCENTLD 206
>05_05_0231 +
23488588-23488689,23488775-23488875,23489012-23489168,
23489365-23489594,23489696-23489795,23489878-23489916
Length = 242
Score = 44.8 bits (101), Expect = 8e-05
Identities = 28/88 (31%), Positives = 49/88 (55%), Gaps = 11/88 (12%)
Frame = +2
Query: 23 VQALFQLMEPTVTIRVRQTDKALVESLLGKAQTDYKNKIKKDV-VLKVDTENFLSPDT-- 193
+Q+L +L EP+V +R R+ D+ VES+L A+ +Y K K ++ + +D + +L P
Sbjct: 130 IQSLLRLREPSVVLRCREADRGHVESVLEAAKKEYAEKAKVNLPKILIDGKVYLPPPKTA 189
Query: 194 -------C-GGIELVAARGRIKISNTLE 253
C GG+ + + G+I NTL+
Sbjct: 190 RDAHGPFCSGGVVIASQDGKIVCDNTLD 217
>01_01_0858 -
6699126-6699128,6699219-6699318,6700052-6700278,
6701032-6701188,6701422-6701522,6702147-6702251
Length = 230
Score = 44.4 bits (100), Expect = 1e-04
Identities = 28/87 (32%), Positives = 47/87 (54%), Gaps = 11/87 (12%)
Frame = +2
Query: 26 QALFQLMEPTVTIRVRQTDKALVESLLGKAQTDYKNK---------IKKDVVLKVDTENF 178
Q+L +L EP V +R R+ D+ LVES+L A+ +Y +K + ++V L ++
Sbjct: 131 QSLLRLKEPAVILRCRKEDRELVESVLESAKNEYADKANIYPPEIMVDRNVYLPPAPSHY 190
Query: 179 LS--PDTCGGIELVAARGRIKISNTLE 253
+ P GG+ L + G+I NTL+
Sbjct: 191 EAHGPSCSGGVVLASRDGKIVCENTLD 217
>11_01_0300 +
2253957-2254245,2254783-2254850,2254967-2255098,
2255811-2255969,2256124-2256489
Length = 337
Score = 30.7 bits (66), Expect = 1.3
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = +3
Query: 162 STPRTFCRPTPVVESSWLQPGDVSRSATLWSSLGADRPAAAAGD 293
S+P T P+P ++ G+ + + T+WS G P+ AAGD
Sbjct: 45 SSPSTSPTPSPPPVAASGHGGEAAATPTMWSLGGEKMPSEAAGD 88
>09_02_0115 + 4413714-4414475
Length = 253
Score = 30.3 bits (65), Expect = 1.8
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +1
Query: 1 RAAGHTYCAGSLPAHGTHCHHPRPSNRQGSGG 96
R H+ + SLP H HHPRP +GS G
Sbjct: 21 RLFSHSSASASLPLLLGHFHHPRPVPPRGSPG 52
>03_04_0095 + 17266595-17266741,17267235-17267807
Length = 239
Score = 29.5 bits (63), Expect = 3.1
Identities = 20/69 (28%), Positives = 27/69 (39%), Gaps = 5/69 (7%)
Frame = +1
Query: 22 CAGSLPAHGTHCHHPRPSNRQGSGGVPARKSPNRLQE*DQEGCCVE-----SRHRELFVA 186
C G + HG H R ++ GV P + + + C + R RE
Sbjct: 150 CVG-VRLHGRRHPHRREAHGGSGSGVFIGGGPREVAQGETSSCARQHLLDGQRRRE--PK 206
Query: 187 RHLWWNRAG 213
RHLWW R G
Sbjct: 207 RHLWWQRGG 215
>06_02_0090 + 11604017-11604082,11604345-11604397,11604710-11605229
Length = 212
Score = 28.7 bits (61), Expect = 5.4
Identities = 13/34 (38%), Positives = 14/34 (41%)
Frame = +1
Query: 16 TYCAGSLPAHGTHCHHPRPSNRQGSGGVPARKSP 117
T + P H CH RP R G VP SP
Sbjct: 131 TSLLAATPGHRRDCHRARPPPRPGGRLVPVAASP 164
>11_06_0042 +
19550260-19550278,19550418-19550530,19551841-19552051,
19552164-19552401,19552662-19552752,19552883-19552917,
19554179-19554452
Length = 326
Score = 28.3 bits (60), Expect = 7.2
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = +1
Query: 37 PAHGTHCHHPRPSNRQGSGGVPARKSPNRL 126
P+ C HP + R SGG A S NR+
Sbjct: 289 PSRPAFCMHPADATRTASGGETAAASANRV 318
>06_01_0023 +
227014-227166,227893-228001,228096-228157,228284-228493,
228609-228696,228774-228936,229037-229235,229456-229653,
229887-230018,230182-230302,230453-230563,230710-230779,
230880-231063,231137-231346
Length = 669
Score = 28.3 bits (60), Expect = 7.2
Identities = 18/64 (28%), Positives = 29/64 (45%)
Frame = -1
Query: 300 VTYLRQQLLGDQLQANSRVLLILIRPLAATSSIPPQVSGDKKFSVSTFNTTSFLILFL*S 121
+ ++RQ ++ D +A SR I +R A PQ G + ++ S L L S
Sbjct: 286 MVFVRQTIVADASKALSRATCIAVRYSAIRKQFGPQTGGPETQVLNYKTQQSRLFPLLAS 345
Query: 120 VWAF 109
+AF
Sbjct: 346 AYAF 349
>03_06_0108 +
31708713-31709079,31709258-31709822,31709933-31710015,
31710231-31710319,31710486-31710559,31710654-31710704,
31710807-31710883,31711454-31712031,31712388-31712555,
31713364-31713417,31713456-31713467,31713554-31713715
Length = 759
Score = 28.3 bits (60), Expect = 7.2
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +1
Query: 16 TYCAGSLPAHGTHCHHPRPSNRQGSGG 96
TYCAG + G H HH ++Q GG
Sbjct: 34 TYCAGGVDDVGHHHHHHVHQHQQQHGG 60
>03_05_0697 + 26888791-26888861,26890468-26890579,26891561-26891757,
26892215-26892266,26893530-26893795,26894007-26894229,
26895154-26895327,26895408-26895485,26895566-26895817,
26896138-26898204,26899477-26901322,26901474-26901574,
26902179-26902535,26902681-26902799,26903558-26903559,
26903630-26903662,26903709-26903841,26904285-26904537,
26905688-26905912,26906401-26906466,26907373-26907471,
26908528-26908545,26908546-26908893,26909878-26910354
Length = 2522
Score = 28.3 bits (60), Expect = 7.2
Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Frame = +2
Query: 203 IELVAARGRIKISNTL-EFAWS*SPSSCCRRYVT-PSSDATLTVNSPIN 343
I A G + + L EF + + CC R+ T DATLT + P N
Sbjct: 1477 IPRAARSGNLSLDKVLVEFFFRVDATPCCIRHATLTEDDATLTEDDPAN 1525
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,023,588
Number of Sequences: 37544
Number of extensions: 456337
Number of successful extensions: 1147
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1144
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2080154268
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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