Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00213
         (777 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52835| Best HMM Match : vATP-synt_E (HMM E-Value=2.1e-05)           36   3e-05
SB_56553| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.4  
SB_57508| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.4  
SB_3211| Best HMM Match : Keratin_B2 (HMM E-Value=0.83)                28   9.7  

>SB_52835| Best HMM Match : vATP-synt_E (HMM E-Value=2.1e-05)
          Length = 288

 Score = 35.9 bits (79), Expect(2) = 3e-05
 Identities = 14/31 (45%), Positives = 21/31 (67%)
 Frame = +2

Query: 98  SLLGKAQTDYKNKIKKDVVLKVDTENFLSPD 190
           ++ G A  +YK + KK++ L VD +NFL PD
Sbjct: 173 AVFGPATEEYKKQTKKEIELTVDEQNFLGPD 203



 Score = 29.9 bits (64), Expect(2) = 3e-05
 Identities = 13/19 (68%), Positives = 16/19 (84%)
 Frame = +2

Query: 197 GGIELVAARGRIKISNTLE 253
           GGIEL A +G+IK+ NTLE
Sbjct: 234 GGIELHAKQGKIKVVNTLE 252


>SB_56553| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 426

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 29/105 (27%), Positives = 45/105 (42%), Gaps = 5/105 (4%)
 Frame = +2

Query: 35  FQLMEPTVTIRVRQTDKALVESLLGKAQTDYKNKIKKDVVLKVDTENFLSPDTCGGIELV 214
           F+L  P + +   Q+    V +       DY++ ++ +  L  D   F   DTC  +ELV
Sbjct: 291 FRLSLPRMQLLKSQSTHWRVTTGFPVYGVDYRDYVRGNF-LAFDIMTFSGADTCKPVELV 349

Query: 215 AARGRIKISNTLEFAWS*S-----PSSCCRRYVTPSSDATLTVNS 334
             RG +  +NT    W         SS  R    P+S A L+ N+
Sbjct: 350 NIRGFVG-ANTEAAFWQDGAAFHIDSSATRCQFKPNSGAALSENN 393


>SB_57508| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1215

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = +2

Query: 122 DYKNKI-KKDVVLKVDTENFLSPDTCGGIELVAARGRIKISNTLE 253
           DY N+I   D+V++ D  N L PD+ G IEL   R  +  SN ++
Sbjct: 47  DYGNRIIGLDLVVRNDDGNILDPDSTGVIELY--RRHLSTSNKIQ 89


>SB_3211| Best HMM Match : Keratin_B2 (HMM E-Value=0.83)
          Length = 533

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = -2

Query: 641 VFIGETNVQLKVEWAHRNAQESEIFRV 561
           +F   TN++L V WA +  +E+++F +
Sbjct: 87  IFEDNTNLKLAVRWALKKIEETKVFNI 113


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,360,872
Number of Sequences: 59808
Number of extensions: 523025
Number of successful extensions: 1180
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1073
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1179
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2119930593
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)