Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00213
         (777 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF045642-4|AAK67210.1|  226|Caenorhabditis elegans Vacuolar h at...    64   1e-10
Z83109-4|CAB05519.1|  705|Caenorhabditis elegans Hypothetical pr...    29   4.9  
U70855-2|AAB09162.2|  447|Caenorhabditis elegans Tyrosinyl trna ...    28   6.5  

>AF045642-4|AAK67210.1|  226|Caenorhabditis elegans Vacuolar h
           atpase protein 8 protein.
          Length = 226

 Score = 63.7 bits (148), Expect = 1e-10
 Identities = 32/83 (38%), Positives = 50/83 (60%)
 Frame = +2

Query: 5   LLVTLIVQALFQLMEPTVTIRVRQTDKALVESLLGKAQTDYKNKIKKDVVLKVDTENFLS 184
           +L  L++Q L QL+E  V +R R+ D  LVE LL +     + +      + +D +NFL 
Sbjct: 115 ILKGLVMQGLLQLLEKEVVLRCREKDLRLVEQLLPECLDGLQKEWGSTTKVVLDKQNFLP 174

Query: 185 PDTCGGIELVAARGRIKISNTLE 253
            ++ GG+EL A  G+IK+S+TLE
Sbjct: 175 SESAGGVELSARAGKIKVSSTLE 197



 Score = 45.6 bits (103), Expect = 4e-05
 Identities = 19/28 (67%), Positives = 23/28 (82%)
 Frame = +1

Query: 256 RLELIAQQLLPEIRNALFGRNPNRKFTD 339
           RLELIA Q++P++R ALFG NPNR F D
Sbjct: 199 RLELIANQIVPQVRTALFGPNPNRSFFD 226


>Z83109-4|CAB05519.1|  705|Caenorhabditis elegans Hypothetical
           protein F44G3.7 protein.
          Length = 705

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 21/76 (27%), Positives = 27/76 (35%), Gaps = 1/76 (1%)
 Frame = +1

Query: 109 KSPNRLQE*DQEGCCVESRHRELFVARHL-WWNRAGCSQGTYQDQQHSGVRLELIAQQLL 285
           K  N L E D+     E       + +H  W N     +  Y  Q  +G    LI  Q  
Sbjct: 110 KKINALLENDESEPGTEKHDGPFDIQKHRNWLNLFKVDEYDYMLQYANGTEAPLIKPQYK 169

Query: 286 PEIRNALFGRNPNRKF 333
            E  N +FG     KF
Sbjct: 170 DEAENVIFGEEVELKF 185


>U70855-2|AAB09162.2|  447|Caenorhabditis elegans Tyrosinyl trna
           synthetase protein1, isoform a protein.
          Length = 447

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = -1

Query: 348 VELIGEFTVRVASEEGVTYLRQQLLGDQLQANSR 247
           + LIGEFT  +    G    R  L GD +  NSR
Sbjct: 92  IALIGEFTASIGDPSGKKSERGLLAGDVIMHNSR 125


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,238,362
Number of Sequences: 27780
Number of extensions: 400434
Number of successful extensions: 918
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 891
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 918
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1872168044
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)