Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00213
         (777 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g11150.1 68417.m01807 vacuolar ATP synthase subunit E / V-ATP...    54   8e-08
At1g64200.1 68414.m07273 vacuolar ATP synthase subunit E, putati...    50   2e-06
At3g08560.1 68416.m00993 vacuolar ATP synthase subunit E, putati...    50   2e-06
At3g07610.1 68416.m00911 transcription factor jumonji (jmjC) dom...    28   7.9  
At1g23020.1 68414.m02876 ferric-chelate reductase, putative simi...    28   7.9  

>At4g11150.1 68417.m01807 vacuolar ATP synthase subunit E / V-ATPase
           E subunit / vacuolar proton pump E subunit (VATE)
           identical to SP|Q39258 Vacuolar ATP synthase subunit E
           (EC 3.6.3.14) (V-ATPase E subunit) (Vacuolar proton pump
           E subunit) {Arabidopsis thaliana}
          Length = 230

 Score = 54.4 bits (125), Expect = 8e-08
 Identities = 37/95 (38%), Positives = 52/95 (54%), Gaps = 11/95 (11%)
 Frame = +2

Query: 2   ELLVTLIVQALFQLMEPTVTIRVRQTDKALVESLLGKAQTDYKNKIKKDV-VLKVDTENF 178
           +LL  LIVQ L +L EP+V +R R+ D  LVE++L  A+ +Y  K K     + VDT+ F
Sbjct: 112 QLLKDLIVQCLLRLKEPSVLLRCREEDLGLVEAVLDDAKEEYAGKAKVHAPEVAVDTKIF 171

Query: 179 LSPDT---------C-GGIELVAARGRIKISNTLE 253
           L P           C GG+ L +  G+I   NTL+
Sbjct: 172 LPPPPKSNDPHGLHCSGGVVLASRDGKIVCENTLD 206


>At1g64200.1 68414.m07273 vacuolar ATP synthase subunit E, putative
           / V-ATPase E subunit, putative / vacuolar proton pump E
           subunit, putative similar to SP|Q39258 Vacuolar ATP
           synthase subunit E (EC 3.6.3.14) (V-ATPase E subunit)
           (Vacuolar proton pump E subunit) {Arabidopsis thaliana};
           contains Pfam profile PF01991: ATP synthase (E/31 kDa)
           subunit
          Length = 237

 Score = 50.0 bits (114), Expect = 2e-06
 Identities = 35/94 (37%), Positives = 47/94 (50%), Gaps = 11/94 (11%)
 Frame = +2

Query: 5   LLVTLIVQALFQLMEPTVTIRVRQTDKALVESLLGKAQTDYKNKIKKDV-VLKVDTENFL 181
           LL  LIVQ L +L EP V +R R+ D  +VES+L  A  +Y  K K     + VD + FL
Sbjct: 119 LLKDLIVQCLLRLKEPAVLLRCREEDLDIVESMLDDASEEYCKKAKVHAPEIIVDKDIFL 178

Query: 182 SP----------DTCGGIELVAARGRIKISNTLE 253
            P             GG+ L +  G+I   NTL+
Sbjct: 179 PPAPSDDDPHALSCAGGVVLASRDGKIVCENTLD 212


>At3g08560.1 68416.m00993 vacuolar ATP synthase subunit E, putative
           / V-ATPase E subunit, putative / vacuolar proton pump E
           subunit, putative similar to SP|Q39258 Vacuolar ATP
           synthase subunit E (EC 3.6.3.14) (V-ATPase E subunit)
           (Vacuolar proton pump E subunit) {Arabidopsis thaliana};
           contains Pfam profile PF01991: ATP synthase (E/31 kDa)
           subunit
          Length = 235

 Score = 49.6 bits (113), Expect = 2e-06
 Identities = 32/97 (32%), Positives = 52/97 (53%), Gaps = 13/97 (13%)
 Frame = +2

Query: 2   ELLVTLIVQALFQLMEPTVTIRVRQTDKALVESLLGKAQTDYKNKIK-KDVVLKVDTENF 178
           +LL +LI+++L +L EP+V +R R+ DK +VES++  A+  Y  K K     + +D + F
Sbjct: 112 KLLKSLIIESLLRLKEPSVLLRCREMDKKVVESVIEDAKRQYAEKAKVGSPKITIDEKVF 171

Query: 179 L------------SPDTCGGIELVAARGRIKISNTLE 253
           L             P   GG+ L +  G+I   NTL+
Sbjct: 172 LPPPPNPKLPDSHDPHCSGGVVLASQDGKIVCENTLD 208


>At3g07610.1 68416.m00911 transcription factor jumonji (jmjC)
           domain-containing protein contains Pfam domain, PF02373:
           jmjC domain
          Length = 1027

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
 Frame = -3

Query: 157 QHNILLDLILVVCLGFSE--QGLHQSLVGLTDADGD 56
           QH  L D++ V CL F E    LH+   G TD   D
Sbjct: 558 QHGSLKDVVAVDCLDFCEVKVNLHEFFTGYTDGRYD 593


>At1g23020.1 68414.m02876 ferric-chelate reductase, putative similar
           to ferric-chelate reductase (FRO1) [Pisum sativum]
           GI:15341529; contains Pfam profile PF01794: Ferric
           reductase like transmembrane component
          Length = 693

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = +1

Query: 202 NRAGCSQGTYQDQQH-SGVRLELIAQQLLPEIRNALFGRNPN 324
           N+    +G YQ+    S + +E    QLLPE  N  +G  PN
Sbjct: 604 NKKSYFKGLYQNVDALSPLMIESSPDQLLPEFTNIHYGERPN 645


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,941,261
Number of Sequences: 28952
Number of extensions: 362454
Number of successful extensions: 804
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 782
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 801
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1736283200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)