Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00212
(759 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein... 36 0.006
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 33 0.033
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo... 31 0.18
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 30 0.31
SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces... 29 0.72
SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces po... 29 0.95
SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce... 27 2.2
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 27 2.2
SPAC328.10c |rps502|rps5-2|40S ribosomal protein S5|Schizosaccha... 27 2.2
SPAC8C9.08 |rps5||40S ribosomal protein S5|Schizosaccharomyces p... 27 2.2
SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos... 27 2.9
SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|ch... 27 3.8
SPBP16F5.08c |||flavin dependent monooxygenase |Schizosaccharomy... 26 5.1
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos... 26 6.7
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 26 6.7
SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster ... 25 8.9
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 25 8.9
SPBC17D11.06 |spp2|pri2|DNA primase large subunit Spp2 |Schizosa... 25 8.9
SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces po... 25 8.9
>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 35.9 bits (79), Expect = 0.006
Identities = 25/83 (30%), Positives = 41/83 (49%)
Frame = +3
Query: 204 GNGLAFDATDSKYLTENATTFTTLSAERGHSLSPQSPLPTVRDCTASSLMKTSATFSGTA 383
G G++ T S + ++ TTFT+ GH+ + S T TA+S + +SAT S
Sbjct: 116 GEGIS-STTGSTF--QSMTTFTSSQTNSGHASASTSIPSTAITVTANSTIYSSATSSFPY 172
Query: 384 GTEKPPAISAAPDLPTTESPASA 452
T+ + + D+ T PAS+
Sbjct: 173 STDVSVSTGTSTDIVTLPPPASS 195
Score = 26.6 bits (56), Expect = 3.8
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 11/69 (15%)
Frame = +2
Query: 515 PPVRSPTLARSAVT---LIPKIAVNTTSV-------SRVLPASTVAPSEPFSRSETPTAL 664
PP S T + S +T +IP + TT+ S LP+S ++ + S S PT++
Sbjct: 190 PPPASSTSSFSTITNTSMIPSSSSFTTTTGSPYYNTSSFLPSSVISSASLSSSSVLPTSI 249
Query: 665 VTA-KTPKT 688
+T+ TP T
Sbjct: 250 ITSTSTPVT 258
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 33.5 bits (73), Expect = 0.033
Identities = 22/68 (32%), Positives = 33/68 (48%)
Frame = +2
Query: 515 PPVRSPTLARSAVTLIPKIAVNTTSVSRVLPASTVAPSEPFSRSETPTALVTAKTPKTFP 694
P + S + S + P +A++T+S + + AST A + SRS PT T +
Sbjct: 305 PQISSTISSSSFIVESPSVALSTSSTTTITNASTPAANTIISRSSKPT-----DTTNSIS 359
Query: 695 DARTTMEN 718
A TT EN
Sbjct: 360 FANTTPEN 367
Score = 26.6 bits (56), Expect = 3.8
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 6/64 (9%)
Frame = +2
Query: 515 PPVRSPTLARSAVTLIPKIAVNTT---SVSRVLPASTVAPSEPFSRSETP---TALVTAK 676
PP+ S T+ S+ + VNT+ + S V+ +ST S + TP ++++ +
Sbjct: 1654 PPITSSTVVNSSTPITSSTVVNTSTPITSSTVVNSSTPITSSTALNTSTPITSSSVLNSS 1713
Query: 677 TPKT 688
TP T
Sbjct: 1714 TPIT 1717
>SPAC17C9.03 |tif471||translation initiation factor eIF4G
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1403
Score = 31.1 bits (67), Expect = 0.18
Identities = 22/68 (32%), Positives = 32/68 (47%)
Frame = +2
Query: 458 ADQVPECKNEEVANGFGARPPVRSPTLARSAVTLIPKIAVNTTSVSRVLPASTVAPSEPF 637
+DQV E N + P+ SA+ ++ + +T V AS+ PSE
Sbjct: 446 SDQVVESPNSSTLSPRNGFAPIVKQQKKSSALKIVNPVT-HTEVVVPQKNASSPNPSETN 504
Query: 638 SRSETPTA 661
SR+ETPTA
Sbjct: 505 SRAETPTA 512
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 30.3 bits (65), Expect = 0.31
Identities = 17/66 (25%), Positives = 29/66 (43%)
Frame = +3
Query: 267 TTLSAERGHSLSPQSPLPTVRDCTASSLMKTSATFSGTAGTEKPPAISAAPDLPTTESPA 446
+++S S+ PQS P +ASS T +T S +S + +P+T S
Sbjct: 466 SSVSVPSSSSVQPQSSTPISSSSSASSPQSTLSTSSEVVSEVSSTLLSGSSAIPSTSSST 525
Query: 447 SACGLI 464
+ +I
Sbjct: 526 PSSSII 531
>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 565
Score = 29.1 bits (62), Expect = 0.72
Identities = 18/56 (32%), Positives = 26/56 (46%)
Frame = +2
Query: 515 PPVRSPTLARSAVTLIPKIAVNTTSVSRVLPASTVAPSEPFSRSETPTALVTAKTP 682
P +RS +L S V LIP + + + S PAS P S S + + V + P
Sbjct: 439 PSIRSLSLRPSQVPLIPPLKCDPNAFSASTPASGAVSRTPSSVSLSSLSNVNSSMP 494
>SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 507
Score = 28.7 bits (61), Expect = 0.95
Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Frame = +2
Query: 545 SAVTLIPKIAVNTTSVSRVLPASTVAPSEPFSRSE-TPTALVTAKTPKTFPDARTT 709
++ T+ + T+SVS V+P+S ++ + P S SE TP + A + + TT
Sbjct: 202 ASATISSVVDSATSSVSTVIPSSIISAAPPDSASESTPASTSYASSTTSATSTSTT 257
>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 964
Score = 27.5 bits (58), Expect = 2.2
Identities = 23/96 (23%), Positives = 41/96 (42%), Gaps = 1/96 (1%)
Frame = +2
Query: 365 DVFWNCWNGEASRYQCSPGLAYDRESRVCMWADQVPECKNEEVANGFGARPPVRSPTLAR 544
++FW+ ++ SR +P YD ++ M + A PV S T +R
Sbjct: 165 NIFWDVFSARVSRVNSTPIQLYDPSTQRQM----------ARPMSNLQASQPVPSSTFSR 214
Query: 545 SAVTLIPKIAVNTTSV-SRVLPASTVAPSEPFSRSE 649
SAV P + +N + + +V+ T+ P + E
Sbjct: 215 SAVVPNPSLPLNPSVLQGQVMNNPTIPKGTPSTSIE 250
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 27.5 bits (58), Expect = 2.2
Identities = 21/67 (31%), Positives = 29/67 (43%)
Frame = +2
Query: 509 ARPPVRSPTLARSAVTLIPKIAVNTTSVSRVLPASTVAPSEPFSRSETPTALVTAKTPKT 688
+RPP R P+L+ A IP + T S P +AP S P T+K P
Sbjct: 239 SRPPERVPSLSAPAPPPIPPPSNGTVSSPPNSPPRPIAPV-----SMNPAINSTSKPPLP 293
Query: 689 FPDARTT 709
P +R +
Sbjct: 294 PPSSRVS 300
>SPAC328.10c |rps502|rps5-2|40S ribosomal protein
S5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 203
Score = 27.5 bits (58), Expect = 2.2
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = +3
Query: 297 LSPQSPLPTVRDCTASSLMKTSATFSGTAGTEKPPAISAAP 419
L+ Q+PL + D A+ + +T G+AGT + A+ +P
Sbjct: 102 LTDQNPLQVLVDAVAACGPREDSTRIGSAGTVRRQAVDVSP 142
>SPAC8C9.08 |rps5||40S ribosomal protein S5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 27.5 bits (58), Expect = 2.2
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = +3
Query: 297 LSPQSPLPTVRDCTASSLMKTSATFSGTAGTEKPPAISAAP 419
L+ Q+PL + D A+ + +T G+AGT + A+ +P
Sbjct: 102 LTDQNPLQVLVDAVAACGPREDSTRIGSAGTVRRQAVDVSP 142
>SPBC947.01 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 660
Score = 27.1 bits (57), Expect = 2.9
Identities = 19/54 (35%), Positives = 27/54 (50%)
Frame = +2
Query: 500 GFGARPPVRSPTLARSAVTLIPKIAVNTTSVSRVLPASTVAPSEPFSRSETPTA 661
G RP S A S T P A + T VS+ + AST +EP ++ TP++
Sbjct: 309 GSSTRPS--SADTAGSPATSPPATADSKTIVSKTISASTTQQTEPLQQT-TPSS 359
>SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|chr
3|||Manual
Length = 862
Score = 26.6 bits (56), Expect = 3.8
Identities = 16/56 (28%), Positives = 27/56 (48%)
Frame = +2
Query: 521 VRSPTLARSAVTLIPKIAVNTTSVSRVLPASTVAPSEPFSRSETPTALVTAKTPKT 688
V S +L + PK+ V T + V AS++ PS+ + S + L + TP +
Sbjct: 640 VCSNSLKKDGEAAPPKLFVQTNCIPPVTQASSLVPSKNNTASSSSLMLDSPVTPSS 695
>SPBP16F5.08c |||flavin dependent monooxygenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 447
Score = 26.2 bits (55), Expect = 5.1
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = -2
Query: 671 QLPVPSASPILKTVPMGQP 615
+LPVPS +PIL T P+ P
Sbjct: 56 KLPVPSTNPILTTEPIVGP 74
>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
orphan|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1563
Score = 25.8 bits (54), Expect = 6.7
Identities = 16/49 (32%), Positives = 26/49 (53%)
Frame = +3
Query: 306 QSPLPTVRDCTASSLMKTSATFSGTAGTEKPPAISAAPDLPTTESPASA 452
Q+ T T ++ ++T+ +GTAGTE A +A PTT + +A
Sbjct: 1191 QATTATETQATTATEVQTTTGATGTAGTE-TQATTATEVQPTTGATGTA 1238
Score = 25.8 bits (54), Expect = 6.7
Identities = 16/49 (32%), Positives = 26/49 (53%)
Frame = +3
Query: 306 QSPLPTVRDCTASSLMKTSATFSGTAGTEKPPAISAAPDLPTTESPASA 452
Q+ T T ++ ++T+ +GTAGTE A +A PTT + +A
Sbjct: 1273 QATTATETQATTATEVQTTTGATGTAGTE-TQATTATEVQPTTGATGTA 1320
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 25.8 bits (54), Expect = 6.7
Identities = 17/60 (28%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
Frame = +3
Query: 261 TFTTLSAERGHSLSPQSPLPTVRDCTASSLMKTSATFSGTA-GTEKPPAISAAPDLPTTE 437
T TT + ++ ++S P P+ ASS S + A KP A+ P P E
Sbjct: 1045 TSTTTTIKQATTVSASKPAPSTVTSAASSPSNISKPSAPVANNVSKPSAVPPPPPPPPAE 1104
>SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 1|||Manual
Length = 782
Score = 25.4 bits (53), Expect = 8.9
Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 4/33 (12%)
Frame = +3
Query: 147 ISCDKYWKCDN----GVAELKTCGNGLAFDATD 233
+ CD+ W C+N G+ L C NG+ +D
Sbjct: 30 LKCDRVWPCENCKKRGIPNL--CPNGILVSVSD 60
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 25.4 bits (53), Expect = 8.9
Identities = 20/72 (27%), Positives = 29/72 (40%)
Frame = +3
Query: 303 PQSPLPTVRDCTASSLMKTSATFSGTAGTEKPPAISAAPDLPTTESPASACGLIRFRSAK 482
P P T T SS + T++T T+ + P S P PT +++ A
Sbjct: 262 PIPPTSTSSTDTNSSPLPTTSTSCTTSTSIPPTGNSTTPVTPTVPPTSTSSTSTPPPPAS 321
Query: 483 TKK*QTDSAPGP 518
T T S+P P
Sbjct: 322 TSSTGTSSSPLP 333
Score = 25.4 bits (53), Expect = 8.9
Identities = 24/92 (26%), Positives = 39/92 (42%), Gaps = 3/92 (3%)
Frame = +3
Query: 246 TENATTFTTLSAERGHSLSPQSPLP---TVRDCTASSLMKTSATFSGTAGTEKPPAISAA 416
T N+TT T + + S +P P T T+SS + +++T T+ + P S
Sbjct: 294 TGNSTTPVTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLPSTSTSCTTSTSIPPTGNSTT 353
Query: 417 PDLPTTESPASACGLIRFRSAKTKK*QTDSAP 512
P PT +++ A T T S+P
Sbjct: 354 PVTPTVPPTSTSSTSTPPPPASTSSTGTSSSP 385
>SPBC17D11.06 |spp2|pri2|DNA primase large subunit Spp2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 459
Score = 25.4 bits (53), Expect = 8.9
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = -3
Query: 526 PHRGPGAESVCYFFVFALRNLISPHADAGLS 434
P GPG C + +++ NL+S A G++
Sbjct: 376 PQLGPGDAHGCPYRTYSVNNLVSALASMGIA 406
>SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 472
Score = 25.4 bits (53), Expect = 8.9
Identities = 8/14 (57%), Positives = 9/14 (64%)
Frame = +2
Query: 344 FPDENKCDVFWNCW 385
F D N D +WNCW
Sbjct: 350 FADRNFYDDWWNCW 363
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,193,153
Number of Sequences: 5004
Number of extensions: 67944
Number of successful extensions: 287
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 247
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 287
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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