Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00212
(759 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1764 + 29322683-29323387,29323809-29323889,29323968-293240... 31 0.75
01_01_0668 - 5109476-5110112,5110196-5110439,5110519-5110917,511... 31 1.3
09_06_0081 + 20745627-20748144,20748211-20748308 30 1.7
06_03_0395 - 20354713-20355570 30 1.7
02_05_0158 - 26362259-26362695,26363732-26363903 30 1.7
08_02_0995 - 23401390-23402379 30 2.3
08_02_0819 - 21529913-21530064,21531016-21531082,21531284-215313... 30 2.3
03_02_1009 + 13189349-13189592,13189782-13189882,13191085-131910... 30 2.3
10_08_0076 + 14685364-14686468,14686521-14686540,14686614-146867... 29 3.0
07_03_0907 - 22490158-22490555,22490647-22491250 29 4.0
04_04_1499 - 34006999-34007232,34007371-34007440,34007580-340076... 29 4.0
01_01_0397 + 3034059-3034691 29 4.0
08_02_1508 + 27602104-27602265,27602398-27602449,27603357-276047... 29 5.3
04_04_1177 - 31497288-31497647,31497782-31497932,31498017-314982... 29 5.3
11_02_0005 - 7264736-7264753,7265086-7265188,7265487-7265539,726... 28 7.0
06_01_0780 + 5824367-5825335 28 7.0
05_07_0333 - 29351372-29351665,29351786-29351928,29352374-293524... 28 9.3
04_03_0362 + 14934236-14934541,14935549-14935647,14935736-149357... 28 9.3
02_04_0594 - 24182946-24183641,24184122-24184476,24184553-241847... 28 9.3
02_04_0117 + 19914704-19915830,19916575-19916860,19917047-19918258 28 9.3
01_06_0795 - 32051794-32053362,32053452-32053595,32054102-320549... 28 9.3
>07_03_1764 +
29322683-29323387,29323809-29323889,29323968-29324072,
29324453-29325382,29326728-29326856,29326953-29327042,
29327237-29327293,29327362-29327394
Length = 709
Score = 31.5 bits (68), Expect = 0.75
Identities = 20/44 (45%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Frame = -3
Query: 622 GNRTRGQHPRDRCSIYGNLRDERDG*TSQRWRP---HRGPGAES 500
G+R+R HPRDR S G+L G TS R P HR G S
Sbjct: 147 GSRSRSAHPRDRYSGGGHLYGGGGGYTSDRGPPTCSHRYDGQSS 190
>01_01_0668 -
5109476-5110112,5110196-5110439,5110519-5110917,
5111390-5111668,5111886-5112257,5112371-5112475,
5112832-5112909,5112990-5113199,5113287-5113406,
5113508-5113606,5113685-5113750,5113914-5114141,
5114216-5114521,5115324-5115381
Length = 1066
Score = 30.7 bits (66), Expect = 1.3
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Frame = +2
Query: 479 KNEEVANGFGARPPVRSPTLARSAV---TLIPKIAVNTTSVSRVLPASTVAPSEPFSRS 646
K G +PP+R A + + T +P + N +SVS P STVA +P + S
Sbjct: 277 KESSSQTGTAHKPPIRGSAPAETPLPQNTNMPAVPKNGSSVSHDRPPSTVAAPKPATSS 335
>09_06_0081 + 20745627-20748144,20748211-20748308
Length = 871
Score = 30.3 bits (65), Expect = 1.7
Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 5/84 (5%)
Frame = +3
Query: 249 ENATTFTTLSAERGHSLSPQSPLPTVR--DCTASSLMKTSATFSGTAGTEKPPAISAAP- 419
+ A++ +T+ R SLS ++P P +R CT + T + T PA A P
Sbjct: 237 DGASSSSTMPRVRSTSLSLRAPAPHLRAPSCTLAPPAPTPPAPTFHVPTPPTPATPAPPA 296
Query: 420 DLPT--TESPASACGLIRFRSAKT 485
D+P T SP + C + + A +
Sbjct: 297 DVPPGFTVSPTTTCHSLGYDGASS 320
>06_03_0395 - 20354713-20355570
Length = 285
Score = 30.3 bits (65), Expect = 1.7
Identities = 36/129 (27%), Positives = 50/129 (38%), Gaps = 6/129 (4%)
Frame = +3
Query: 255 ATTFTTLSAERGHSLSPQSPL-PTVR---DCTASSLMKTSATFSGTAGTEKPPA-ISAAP 419
AT TT +A HS + SP P R C + + E PP +AAP
Sbjct: 26 ATVTTTAAAAVEHSATSPSPSSPRTRLFPRCQRRHRLHSHGRHRRCHRREPPPPQTAAAP 85
Query: 420 DLPTTESPASACGLIRFRSAKTKK*QTDSA-PGPR*GLQRWLVQPSRSSRRLP*ILHLSR 596
TT+ PA+A + R T + + +A G +R P+ P +
Sbjct: 86 SPSTTKQPATAAAVTNRRRQPTTQIRPRAAVDAADRGRRRQPPPPTAPPLEAP-----AN 140
Query: 597 GCCPRVRLP 623
GCC R R P
Sbjct: 141 GCCRRCRGP 149
>02_05_0158 - 26362259-26362695,26363732-26363903
Length = 202
Score = 30.3 bits (65), Expect = 1.7
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +2
Query: 566 KIAVNTTSVSRVLPASTVAPSEPFSRSE-TPTALVTAKTPKTFPDARTT 709
K+AV ++ + P T + S P + + TP++ TP + PDA TT
Sbjct: 117 KLAVTVSAAAATTPTPTASSSPPSTATPATPSSDPGMDTPSSTPDATTT 165
>08_02_0995 - 23401390-23402379
Length = 329
Score = 29.9 bits (64), Expect = 2.3
Identities = 16/59 (27%), Positives = 27/59 (45%)
Frame = +3
Query: 216 AFDATDSKYLTENATTFTTLSAERGHSLSPQSPLPTVRDCTASSLMKTSATFSGTAGTE 392
AF S++L ++ + L+P+ PLP D ++L T A+ S + G E
Sbjct: 88 AFSRVHSRFLNALVAAAGVVAVSVDYRLAPEHPLPAAYDDAWAALRWTVASCSASGGPE 146
>08_02_0819 -
21529913-21530064,21531016-21531082,21531284-21531373,
21531506-21531622,21532026-21532145,21532313-21533581
Length = 604
Score = 29.9 bits (64), Expect = 2.3
Identities = 21/54 (38%), Positives = 30/54 (55%)
Frame = +3
Query: 288 GHSLSPQSPLPTVRDCTASSLMKTSATFSGTAGTEKPPAISAAPDLPTTESPAS 449
G + +PQ+ +VR CT+ SL + SA GTA T + A SA +T S +S
Sbjct: 47 GGTPAPQAAASSVRRCTSPSLSRASAA-EGTASTNR--AQSAERRRSSTPSSSS 97
>03_02_1009 +
13189349-13189592,13189782-13189882,13191085-13191090,
13191712-13191933,13192052-13192137,13192330-13192426,
13192817-13192909,13193031-13193186
Length = 334
Score = 29.9 bits (64), Expect = 2.3
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +3
Query: 309 SPLPTVRDCTASSLMKTSATFSGTAGTEKPPAISAAPDL 425
SP P T+S SAT +GT G + PP + + PD+
Sbjct: 42 SPPPPPSSSTSSFPAAASATAAGTGG-DAPPIVGSCPDM 79
>10_08_0076 +
14685364-14686468,14686521-14686540,14686614-14686749,
14687537-14687664,14687742-14687855
Length = 500
Score = 29.5 bits (63), Expect = 3.0
Identities = 17/55 (30%), Positives = 27/55 (49%)
Frame = -3
Query: 523 HRGPGAESVCYFFVFALRNLISPHADAGLSVVGKSGAALIAGGFSVPAVPENVAL 359
H G + C+ F+ +L NL + GL + +S +L+ F V A+P N L
Sbjct: 316 HHCDGLKKACFSFLGSLENLSAVVTGDGLEHLSRSYPSLMKELFVVMALPPNHVL 370
>07_03_0907 - 22490158-22490555,22490647-22491250
Length = 333
Score = 29.1 bits (62), Expect = 4.0
Identities = 16/60 (26%), Positives = 26/60 (43%)
Frame = +2
Query: 560 IPKIAVNTTSVSRVLPASTVAPSEPFSRSETPTALVTAKTPKTFPDARTTMENWI*RRSA 739
+P +AV +V+ + V E + P + + KT P+A EN+ RSA
Sbjct: 95 VPVVAVPAPAVTMPMEVPVVPVPEAMAPEPIPVEVTVPEVVKTAPEAEEAEENFTISRSA 154
>04_04_1499 -
34006999-34007232,34007371-34007440,34007580-34007637,
34007940-34007979,34008183-34008259,34008366-34008582,
34008703-34009266
Length = 419
Score = 29.1 bits (62), Expect = 4.0
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +2
Query: 275 ECGERTQLEPPISTPHCSRLYGIF 346
+ GERT L PP H R++G+F
Sbjct: 144 DSGERTPLPPPSQQQHQDRIHGLF 167
>01_01_0397 + 3034059-3034691
Length = 210
Score = 29.1 bits (62), Expect = 4.0
Identities = 15/31 (48%), Positives = 20/31 (64%)
Frame = +1
Query: 445 RLHVG*SGSGVQKRRSSKRIRRPAPGEVSNA 537
R+ G SGSG + R +KR+RR A +VS A
Sbjct: 154 RVVEGRSGSGSHRPREAKRLRRRARDDVSKA 184
>08_02_1508 +
27602104-27602265,27602398-27602449,27603357-27604757,
27604833-27606140,27606594-27607435
Length = 1254
Score = 28.7 bits (61), Expect = 5.3
Identities = 21/82 (25%), Positives = 36/82 (43%), Gaps = 4/82 (4%)
Frame = +2
Query: 455 WADQVPECKNEEVANGFGARPPVRSPTLARSAVTLIPKIAVNTTSVS----RVLPASTVA 622
W ++P+ V + P + T +R+ + P + +TS S + LP+ T+
Sbjct: 233 WQTELPQTS---VGHTIRLDPRQTTSTESRTVLVPPPSAGMISTSFSSQREQPLPSETIR 289
Query: 623 PSEPFSRSETPTALVTAKTPKT 688
+P R E+ T KTP T
Sbjct: 290 QDKPSPRKESNFFTTTEKTPST 311
>04_04_1177 -
31497288-31497647,31497782-31497932,31498017-31498254,
31498373-31498583,31498674-31498780,31498877-31498905,
31499764-31499930
Length = 420
Score = 28.7 bits (61), Expect = 5.3
Identities = 14/26 (53%), Positives = 16/26 (61%)
Frame = +2
Query: 581 TTSVSRVLPASTVAPSEPFSRSETPT 658
TT S + ST +EPFS SETPT
Sbjct: 391 TTRSSNMRSFSTTDETEPFSSSETPT 416
>11_02_0005 -
7264736-7264753,7265086-7265188,7265487-7265539,
7265791-7265880,7266093-7266217,7266528-7266753
Length = 204
Score = 28.3 bits (60), Expect = 7.0
Identities = 16/47 (34%), Positives = 20/47 (42%)
Frame = +3
Query: 312 PLPTVRDCTASSLMKTSATFSGTAGTEKPPAISAAPDLPTTESPASA 452
P P R A + +AT S KPP + P LPT +P A
Sbjct: 17 PRPRFRVRAAWDMNPGAATVSAPKPKAKPPPPPSPPPLPTAPAPTHA 63
>06_01_0780 + 5824367-5825335
Length = 322
Score = 28.3 bits (60), Expect = 7.0
Identities = 17/69 (24%), Positives = 31/69 (44%)
Frame = +3
Query: 216 AFDATDSKYLTENATTFTTLSAERGHSLSPQSPLPTVRDCTASSLMKTSATFSGTAGTEK 395
A T +YL A+ ++ + L+P+ PLP D + ++L AT + +
Sbjct: 91 ATSPTYHRYLNALASRARVVAVSVEYRLAPEHPLPAAYDDSWAALAWAVATAAAPGAVDP 150
Query: 396 PPAISAAPD 422
P ++A D
Sbjct: 151 EPWLAAHGD 159
>05_07_0333 -
29351372-29351665,29351786-29351928,29352374-29352434,
29352950-29353034,29353254-29353292,29353487-29353557,
29353640-29353735,29353869-29354017,29354106-29354175,
29354752-29354792,29354902-29354977
Length = 374
Score = 27.9 bits (59), Expect = 9.3
Identities = 28/85 (32%), Positives = 46/85 (54%), Gaps = 5/85 (5%)
Frame = +3
Query: 336 TASSLMKTSATFSG-TAGTEKPPAISAAPDLPTTESPASACGLIRFRSAKTKK*QTDSAP 512
T+ + +S+TF G ++G+ + PA+S++ + P+TE+ S R R+ TD++P
Sbjct: 272 TSKDAVFSSSTFLGRSSGSSRRPAVSSSRE-PSTEADQS-----RSRT-------TDASP 318
Query: 513 G--PR*GLQRWLVQ--PSRSSRRLP 575
G R G RW Q S +RR P
Sbjct: 319 GAFQRSGAPRWSPQMVDSSDNRRTP 343
>04_03_0362 +
14934236-14934541,14935549-14935647,14935736-14935798,
14935878-14935940,14937242-14937362,14937472-14937872,
14937968-14938141,14938252-14938570,14938659-14938735,
14938808-14938877,14938951-14939007,14939100-14939314,
14939436-14939561,14939649-14939944,14940032-14940203,
14940300-14940398,14940471-14940602,14940692-14940792,
14941391-14941580,14941819-14941842
Length = 1034
Score = 27.9 bits (59), Expect = 9.3
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = +2
Query: 380 CWNGEASRYQCSPGLAYDRESRVCMWADQVPECKNEEV 493
CW G + RY+CSP VCM ++P + +
Sbjct: 77 CWRGLSRRYKCSPERTV---LSVCMLTGEMPRVQTSRL 111
>02_04_0594 -
24182946-24183641,24184122-24184476,24184553-24184743,
24184840-24185046
Length = 482
Score = 27.9 bits (59), Expect = 9.3
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +1
Query: 463 SGSGVQKRRSSKRIRRPAPGEVSNAGSFSRHAHP 564
SG+G+Q R S+ R P E A S HA P
Sbjct: 32 SGTGIQDGRGSEHSLRHVPDEPQKAPPTSVHARP 65
>02_04_0117 + 19914704-19915830,19916575-19916860,19917047-19918258
Length = 874
Score = 27.9 bits (59), Expect = 9.3
Identities = 14/52 (26%), Positives = 19/52 (36%)
Frame = +1
Query: 511 PAPGEVSNAGSFSRHAHPEDCRKYYICLEGVAREYGCPIGTVFKIGDADGTG 666
PAPG + A H+HP C+ +C G +G G G
Sbjct: 9 PAPG-LLRAACLRSHSHPLQCKALELCFNVALNRLPASAGASPLLGHGHGVG 59
>01_06_0795 -
32051794-32053362,32053452-32053595,32054102-32054965,
32055335-32055892
Length = 1044
Score = 27.9 bits (59), Expect = 9.3
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +2
Query: 92 CGPRVLQMPRRLRFLPSPHLL 154
C PR + PR L +L SPH+L
Sbjct: 351 CSPRKHEPPRCLNYLTSPHVL 371
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,002,622
Number of Sequences: 37544
Number of extensions: 541890
Number of successful extensions: 2215
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 2111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2213
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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