Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00212
(759 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g33835.1 68415.m04152 zinc finger (CCCH-type) family protein ... 29 2.5
At1g36150.1 68414.m04494 protease inhibitor/seed storage/lipid t... 29 2.5
At3g06410.1 68416.m00739 zinc finger (CCCH-type) family protein ... 29 3.4
At2g47850.1 68415.m05972 zinc finger (CCCH-type) family protein ... 29 3.4
At5g18550.1 68418.m02193 zinc finger (CCCH-type) family protein ... 29 4.4
At5g08020.1 68418.m00933 replication protein, putative similar t... 29 4.4
At2g43680.2 68415.m05430 calmodulin-binding family protein simil... 29 4.4
At2g43680.1 68415.m05429 calmodulin-binding family protein simil... 29 4.4
At2g28500.1 68415.m03463 LOB domain protein 11 / lateral organ b... 29 4.4
At1g44770.1 68414.m05129 expressed protein 29 4.4
At1g26700.1 68414.m03252 seven transmembrane MLO family protein ... 29 4.4
At3g30841.1 68416.m03967 2,3-biphosphoglycerate-independent phos... 28 5.9
At5g23700.1 68418.m02778 hypothetical protein 28 7.7
At3g13090.1 68416.m01639 ABC transporter, putative similar to MR... 28 7.7
At1g46696.1 68414.m05216 hypothetical protein slight similarity ... 28 7.7
At1g35180.1 68414.m04362 expressed protein similar to hypothetic... 28 7.7
At1g35170.1 68414.m04361 expressed protein 28 7.7
At1g18280.1 68414.m02282 protease inhibitor/seed storage/lipid t... 28 7.7
At1g11660.1 68414.m01339 heat shock protein, putative strong sim... 28 7.7
>At2g33835.1 68415.m04152 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 587
Score = 29.5 bits (63), Expect = 2.5
Identities = 20/63 (31%), Positives = 28/63 (44%)
Frame = +2
Query: 530 PTLARSAVTLIPKIAVNTTSVSRVLPASTVAPSEPFSRSETPTALVTAKTPKTFPDARTT 709
PTL AV+ NTTS + + + PSEPF S T + + + D T
Sbjct: 305 PTLQGVAVSSDKGAEANTTSTKKKVSSDDWEPSEPFKASFTIPPYILPSSDALY-DPFTD 363
Query: 710 MEN 718
+EN
Sbjct: 364 IEN 366
>At1g36150.1 68414.m04494 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein low similarity to
glucoamylase S1/S2 [Precursor] from Saccharomyces
cerevisiae [SP|P08640], proteophosphoglycan from
Leishmania major [GI:5420387]; contains Pfam protease
inhibitor/seed storage/LTP family domain PF00234
Length = 256
Score = 29.5 bits (63), Expect = 2.5
Identities = 22/75 (29%), Positives = 31/75 (41%)
Frame = +2
Query: 470 PECKNEEVANGFGARPPVRSPTLARSAVTLIPKIAVNTTSVSRVLPASTVAPSEPFSRSE 649
P C A PPV SPT + S+ P I ++ +VS P S P S S
Sbjct: 119 PNCDVSTPAASTPVSPPVESPTTSPSSAK-SPAITPSSPAVSH-SPPPVRHSSPPVSHSS 176
Query: 650 TPTALVTAKTPKTFP 694
P + + T ++ P
Sbjct: 177 PPVSHSSPPTSRSSP 191
>At3g06410.1 68416.m00739 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 437
Score = 29.1 bits (62), Expect = 3.4
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = -3
Query: 625 WGNRTRGQHPRDRCSIYGNLRDE 557
+G+R R HPRDR ++ G +R E
Sbjct: 46 YGSRCRFNHPRDRGAVIGGVRGE 68
>At2g47850.1 68415.m05972 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 468
Score = 29.1 bits (62), Expect = 3.4
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -3
Query: 625 WGNRTRGQHPRDRCSIYGNLR 563
+GNR R HPRDR S+ +R
Sbjct: 62 YGNRCRYNHPRDRASVEATVR 82
>At5g18550.1 68418.m02193 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 456
Score = 28.7 bits (61), Expect = 4.4
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -3
Query: 625 WGNRTRGQHPRDRCSIYGNLRDE 557
+G+R R HPR+R + G LR E
Sbjct: 59 YGSRCRFNHPRNRAPVLGGLRTE 81
>At5g08020.1 68418.m00933 replication protein, putative similar to
replication protein A1 [Oryza sativa] GI:2258469;
contains InterPro entry IPR004365: OB-fold nucleic acid
binding domain
Length = 604
Score = 28.7 bits (61), Expect = 4.4
Identities = 13/45 (28%), Positives = 25/45 (55%)
Frame = -2
Query: 146 VVRVETEVVGAFEGLLGHTTPRAAANTNKHLEFILRTKSWHESSG 12
V+ +++ VGAF+G+ T R+ N + + KSW+++ G
Sbjct: 357 VIAIKSLKVGAFQGVSLSTISRSNVVINPNSPEATKLKSWYDAEG 401
>At2g43680.2 68415.m05430 calmodulin-binding family protein similar
to SF16 protein [Helianthus annuus] GI:560150; contains
Pfam profile PF00612: IQ calmodulin-binding motif
Length = 669
Score = 28.7 bits (61), Expect = 4.4
Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
Frame = +2
Query: 497 NGFGARPPVR--SPTLARSAVTLIPKIAVNTTSVSRVLPASTVAPSEPFSRSETPTALVT 670
N + A PP R SP +A T P++A R T++P P R+E P +L +
Sbjct: 86 NPYSASPPPRPASPRVASPRPTS-PRVASPRVPSPRAEVPRTLSPKPPSPRAEVPRSL-S 143
Query: 671 AKTPKTFPD 697
K P D
Sbjct: 144 PKPPSPRAD 152
>At2g43680.1 68415.m05429 calmodulin-binding family protein similar
to SF16 protein [Helianthus annuus] GI:560150; contains
Pfam profile PF00612: IQ calmodulin-binding motif
Length = 668
Score = 28.7 bits (61), Expect = 4.4
Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
Frame = +2
Query: 497 NGFGARPPVR--SPTLARSAVTLIPKIAVNTTSVSRVLPASTVAPSEPFSRSETPTALVT 670
N + A PP R SP +A T P++A R T++P P R+E P +L +
Sbjct: 85 NPYSASPPPRPASPRVASPRPTS-PRVASPRVPSPRAEVPRTLSPKPPSPRAEVPRSL-S 142
Query: 671 AKTPKTFPD 697
K P D
Sbjct: 143 PKPPSPRAD 151
>At2g28500.1 68415.m03463 LOB domain protein 11 / lateral organ
boundaries domain protein 11 (LBD11) identical to
SP|Q9SK08 LOB domain protein 11 {Arabidopsis thaliana}
Length = 229
Score = 28.7 bits (61), Expect = 4.4
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 6/54 (11%)
Frame = +3
Query: 336 TASSLMKTSATF------SGTAGTEKPPAISAAPDLPTTESPASACGLIRFRSA 479
TAS++ K + T S T+ PP+ P P SP +AC ++R R A
Sbjct: 11 TASAVAKVTETTTPVNSPSPTSSPPPPPSPQQPPQPPVVLSPCAACKILRRRCA 64
>At1g44770.1 68414.m05129 expressed protein
Length = 271
Score = 28.7 bits (61), Expect = 4.4
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = -1
Query: 402 REASPFQQFQKTSHLFSSGKMPYSLEQWGVEIGG 301
+E + + K ++ +GKM Y+L WG+ GG
Sbjct: 212 QEVTALSKVGKVVDIWHAGKMFYTLSTWGLAFGG 245
>At1g26700.1 68414.m03252 seven transmembrane MLO family protein /
MLO-like protein 14 (MLO14) identical to membrane
protein Mlo14 [Arabidopsis thaliana]
gi|14091598|gb|AAK53807; similar to MLO protein
SWISS-PROT:P93766, NCBI_gi:1877221 [Hordeum
vulgare][Barley]
Length = 554
Score = 28.7 bits (61), Expect = 4.4
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +3
Query: 201 CGNGLAFDATDSKYLTE-NATTFTTLSAERGHSLSPQSPLPTVRDC 335
CGN + + + ++TTF+ L E SLS S LP R+C
Sbjct: 509 CGNSSSVETPILRPCASISSTTFSRLQTETTDSLSRSSSLPMRREC 554
>At3g30841.1 68416.m03967 2,3-biphosphoglycerate-independent
phosphoglycerate mutase-related /
phosphoglyceromutase-related contains weak similarity to
2,3-bisphosphoglycerate-independent phosphoglycerate
mutase 1 (EC 5.4.2.1) (Phosphoglyceromutase 1)
(BPG-independent PGAM 1) (aPGAM 1) (aPGAM-Mj1).
(Swiss-Prot:Q59007) [Methanococcus jannaschii]
Length = 495
Score = 28.3 bits (60), Expect = 5.9
Identities = 29/104 (27%), Positives = 42/104 (40%), Gaps = 2/104 (1%)
Frame = -3
Query: 466 LISPHADAGLSVVGKSGAALIAGGFSVPAVPENVALVFIR-EDAVQSRTVGSGDWG-LKL 293
L +P A + S A IA S P P VF+ ED + D+G L +
Sbjct: 278 LEAPGATGDYRTLLTSKATAIANALSAPLNP--CPNVFVPGEDGHKPGRSDGYDFGFLHI 335
Query: 292 CPLSALNVVKVVAFSVKYLESVASKARPLPQVFSSATPLSHFQY 161
+ K F V+ LE+V R L ++ A +H+QY
Sbjct: 336 KAIDDAGHDKATMFKVRGLEAVDKAIRQLAKLLWQAESSTHYQY 379
>At5g23700.1 68418.m02778 hypothetical protein
Length = 572
Score = 27.9 bits (59), Expect = 7.7
Identities = 29/91 (31%), Positives = 41/91 (45%), Gaps = 4/91 (4%)
Frame = +2
Query: 425 AYDRESRVCMWADQVPECKNEEVANGFGARPPVRSP---TLARSAVTLIPKIAVNTTS-V 592
A R ++V ++ E +++ + F PP P + AR + P I N T V
Sbjct: 57 AAQRLAKVMALQNKDNEEDDDDDDHEFKFAPPSSGPINGSFARRNRSHSPAIGRNITEQV 116
Query: 593 SRVLPASTVAPSEPFSRSETPTALVTAKTPK 685
+ V +ST PS FSRS TP A PK
Sbjct: 117 TSVRSSSTGRPST-FSRSSTPNASPLWMPPK 146
>At3g13090.1 68416.m01639 ABC transporter, putative similar to
MRP-like ABC transporter [Arabidopsis thaliana]
GI:2316016; contains Pfam profile: PF00005 ABC
transporter
Length = 1466
Score = 27.9 bits (59), Expect = 7.7
Identities = 15/56 (26%), Positives = 23/56 (41%), Gaps = 1/56 (1%)
Frame = +3
Query: 294 SLSPQSPLPTVRDCTASSLMKTSATFSGTAGTEKPPAISA-APDLPTTESPASACG 458
S SP+PT+RD + GT G+ K +S+ ++P CG
Sbjct: 609 SWDDSSPIPTLRDMNFKVSQGMNVAICGTVGSGKSSLLSSILGEVPKISGNLKVCG 664
>At1g46696.1 68414.m05216 hypothetical protein slight similarity to
maebl (GI:20087019)[Plasmodium falciparum].
Length = 616
Score = 27.9 bits (59), Expect = 7.7
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +2
Query: 596 RVLPASTVAPSEPFSRSETPTALVTAKTPKT 688
R L + PS+ SR ETPT++ K P+T
Sbjct: 211 RSLEKTKYQPSDSGSRPETPTSVSAGKKPET 241
>At1g35180.1 68414.m04362 expressed protein similar to hypothetical
protein GB:AAF69173 GI:7767676 from [Arabidopsis
thaliana]
Length = 231
Score = 27.9 bits (59), Expect = 7.7
Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Frame = -3
Query: 340 AVQSRTVGSGDWGLKLCPL---SALNVVKVVAFSVKYL 236
AV T+ DW +CP+ S+L ++ +AFS+ Y+
Sbjct: 50 AVTLATLSIQDWSCPVCPIASTSSLRQMETLAFSLSYM 87
>At1g35170.1 68414.m04361 expressed protein
Length = 221
Score = 27.9 bits (59), Expect = 7.7
Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Frame = -3
Query: 340 AVQSRTVGSGDWGLKLCPL---SALNVVKVVAFSVKYL 236
AV T+ DW +CP+ S+L ++ +AFS+ Y+
Sbjct: 50 AVTLATLSIQDWSCPVCPIASTSSLRQMETLAFSLSYM 87
>At1g18280.1 68414.m02282 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein similar to lipid
transfer protein GI:2627141 from (Picea abies); contains
Pfam profile PF00234 Protease inhibitor/seed storage/LTP
family
Length = 180
Score = 27.9 bits (59), Expect = 7.7
Identities = 21/83 (25%), Positives = 35/83 (42%)
Frame = +3
Query: 264 FTTLSAERGHSLSPQSPLPTVRDCTASSLMKTSATFSGTAGTEKPPAISAAPDLPTTESP 443
F + + +L+ ++ L + C A + + T +GT + PPA P +T S
Sbjct: 81 FNNVDMLKSLNLTKENALDLPKACGAKADVSLCKTSAGTNSSSTPPATPKTPPASST-ST 139
Query: 444 ASACGLIRFRSAKTKK*QTDSAP 512
+ G + T K T SAP
Sbjct: 140 GTGSGSTGNAAPSTAK-PTSSAP 161
>At1g11660.1 68414.m01339 heat shock protein, putative strong
similarity to gb|Z70314 heat-shock protein from
Arabidopsis thaliana and is a member of the PF|00012
Hsp70 protein family
Length = 773
Score = 27.9 bits (59), Expect = 7.7
Identities = 17/56 (30%), Positives = 29/56 (51%)
Frame = -3
Query: 451 ADAGLSVVGKSGAALIAGGFSVPAVPENVALVFIREDAVQSRTVGSGDWGLKLCPL 284
AD+GLS+ L+ G +PA+ + ++ +F RE RTV + + + C L
Sbjct: 324 ADSGLSLDQIHSVELVGSGSRIPAISKMLSSLFKRE---LGRTVNASECVARGCAL 376
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,471,838
Number of Sequences: 28952
Number of extensions: 392728
Number of successful extensions: 1395
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1328
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1392
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1692519896
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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