Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00211
         (747 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    23   3.4  
DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8 prot...    22   4.5  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    22   4.5  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    22   4.5  
AY695256-1|AAW21973.1|  168|Tribolium castaneum ventral nerve co...    22   6.0  
AF263515-1|AAF74207.1|  126|Tribolium castaneum cytochrome P450 ...    21   7.9  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +3

Query: 705 SWGPPLSGNAPVAR 746
           SW  P  GN+P+ R
Sbjct: 915 SWVAPFDGNSPITR 928


>DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8
           protein.
          Length = 496

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = -1

Query: 135 GRGSYNRSLYVCSCGGNKIRPPKETG 58
           G G Y RS  + S   NK+  P   G
Sbjct: 263 GLGVYGRSFTLASASNNKLGAPIVAG 288


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -3

Query: 544 DGRSAQIGGPAAARLAQISAENGH 473
           DG+  +   P++  +A  +A NGH
Sbjct: 104 DGQEYRPDSPSSMHMANTAAPNGH 127


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -3

Query: 544 DGRSAQIGGPAAARLAQISAENGH 473
           DG+  +   P++  +A  +A NGH
Sbjct: 106 DGQEYRPDSPSSMHMANTAAPNGH 129


>AY695256-1|AAW21973.1|  168|Tribolium castaneum ventral nerve cord
           defective protein protein.
          Length = 168

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = -2

Query: 299 LQGGACKPDPRSRGEDGAPV 240
           L GG   PDP S    GAP+
Sbjct: 132 LSGGPKHPDPGSLQVPGAPM 151


>AF263515-1|AAF74207.1|  126|Tribolium castaneum cytochrome P450
           monooxygenase protein.
          Length = 126

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
 Frame = -1

Query: 738 LERSLTEVVPMTPSVRY---GINQKIVSTVATKSSAG 637
           +ER + EV+ + PSV Y    + + +V+T   K   G
Sbjct: 48  MERVIKEVLRLYPSVHYISRELGEDMVTTTGYKLRKG 84


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,902
Number of Sequences: 336
Number of extensions: 3081
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 19923648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)