Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00211
         (747 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    27   2.8  
SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ...    26   6.6  
SPBC887.17 |||uracil permease |Schizosaccharomyces pombe|chr 2||...    26   6.6  

>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 19/89 (21%), Positives = 41/89 (46%)
 Frame = -3

Query: 514  AAARLAQISAENGHLRAENGQMKVDLAELRTLVNDLVEKQCNSAXXXXXXXXXXXXXXXE 335
            +A +L++   E  HLR     + ++ + + +L+  L  ++  S                +
Sbjct: 2208 SAIQLSKDLREIFHLRISALDI-LNSSTINSLIRKLKRRRTESHTRNDKIHESIDQFFKD 2266

Query: 334  LRRQLLIQEARSSKVERASPTLAHEAKMV 248
            +R+Q+LI +    K+E+  P LA +  M+
Sbjct: 2267 IRKQILIPQTLCDKIEQILPCLASQCSML 2295


>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -2

Query: 71  QKKPASTPTPSQPAKEGP 18
           Q+ PASTPT + PA + P
Sbjct: 406 QRIPASTPTNTNPADQNP 423


>SPBC887.17 |||uracil permease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 625

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +1

Query: 166 AGVAAFFGPAYVLTVAAPLIFRGAGT 243
           AG+  FF  AY+L V A ++    GT
Sbjct: 49  AGLTTFFAMAYILAVNATILVDTGGT 74


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,634,652
Number of Sequences: 5004
Number of extensions: 46952
Number of successful extensions: 142
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)