Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00211
(747 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_48918| Best HMM Match : Transformer (HMM E-Value=2.6) 31 0.99
SB_42661| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.3
SB_27478| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.3
SB_33702| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.3
SB_54008| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_39016| Best HMM Match : Extensin_2 (HMM E-Value=0.53) 29 3.0
SB_38206| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_34906| Best HMM Match : Cadherin (HMM E-Value=0) 29 3.0
SB_57906| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_43682| Best HMM Match : CcoS (HMM E-Value=4.1) 29 4.0
SB_36009| Best HMM Match : Collagen (HMM E-Value=0) 29 4.0
SB_15409| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_33549| Best HMM Match : Collagen (HMM E-Value=2e-05) 29 4.0
SB_6496| Best HMM Match : Collagen (HMM E-Value=0) 29 5.3
SB_37142| Best HMM Match : Peptidase_A22B (HMM E-Value=0) 29 5.3
SB_31260| Best HMM Match : rve (HMM E-Value=5.2e-25) 29 5.3
SB_33878| Best HMM Match : Attractin (HMM E-Value=5.2) 28 7.0
SB_5022| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_45519| Best HMM Match : RNB (HMM E-Value=1.6e-35) 28 7.0
SB_27954| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_24368| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.2
>SB_48918| Best HMM Match : Transformer (HMM E-Value=2.6)
Length = 256
Score = 31.1 bits (67), Expect = 0.99
Identities = 13/25 (52%), Positives = 19/25 (76%)
Frame = -1
Query: 531 RKSVDLLQPDWPKSARRTDIFARRT 457
+KS DL++P+ P+ ARR FAR+T
Sbjct: 98 KKSKDLVRPEAPRFARRNSRFARKT 122
>SB_42661| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1717
Score = 30.7 bits (66), Expect = 1.3
Identities = 16/54 (29%), Positives = 19/54 (35%), Gaps = 1/54 (1%)
Frame = -1
Query: 252 WCPCAGTSKDQGSGYC*DIRGTEES-CDTRDTVSHFCRCSGRGSYNRSLYVCSC 94
W G C RG + CD H CSG G N + +VC C
Sbjct: 1263 WTAATAFVNQVSVGICKCFRGWRGTYCDNPGCPGHRTDCSGHGECNSATHVCVC 1316
>SB_27478| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 323
Score = 30.7 bits (66), Expect = 1.3
Identities = 30/96 (31%), Positives = 36/96 (37%), Gaps = 5/96 (5%)
Frame = -2
Query: 506 PTGPNQRGERTSSRGERADEGGLGRVAHTGQRPSREAVQLGPCTYSARDRRDQ*DRGVKA 327
PTGP T G + D G G TG P + GP T + D G
Sbjct: 14 PTGPKGDTGATGPTGPKGDTGATGPTGPTG--PKGDTGATGP-TGPTGPKGDTGATGPTG 70
Query: 326 AASDTG-----GKKLQGGACKPDPRSRGEDGAPVPA 234
DTG G K GA P+ +G+ GA PA
Sbjct: 71 PKGDTGATGPTGPKGDTGATGPN-GPKGDTGATGPA 105
Score = 29.5 bits (63), Expect = 3.0
Identities = 29/103 (28%), Positives = 33/103 (32%)
Frame = -2
Query: 506 PTGPNQRGERTSSRGERADEGGLGRVAHTGQRPSREAVQLGPCTYSARDRRDQ*DRGVKA 327
PTGP T G + D G G TG + A T + D G
Sbjct: 134 PTGPKGDTGATGPTGPKGDTGATGPTGPTGPKGDTGATGPAGPTGPTGPKGDTGATGPAG 193
Query: 326 AASDTGGKKLQGGACKPDPRSRGEDGAPVPAPRKIKGAATVKT 198
A TG K G DP G G P K + AT T
Sbjct: 194 PAGPTGPKGDTGATGPTDP--TGPTGPKGPTGPKGEIGATGPT 234
Score = 27.9 bits (59), Expect = 9.2
Identities = 30/98 (30%), Positives = 35/98 (35%), Gaps = 7/98 (7%)
Frame = -2
Query: 506 PTGPNQRGERTSSRGERADEGGLGRVAHTGQRPSREAVQLGPCTYSARDRRDQ*DRGVKA 327
PTGP T G + D G G TG P+ GP T D G
Sbjct: 80 PTGPKGDTGATGPNGPKGDTGATGPAGPTG--PTGPKGDTGP-TDPTGPNGDTGATGPTG 136
Query: 326 AASDTG-----GKKLQGGACKPDPRS--RGEDGAPVPA 234
DTG G K GA P + +G+ GA PA
Sbjct: 137 PKGDTGATGPTGPKGDTGATGPTGPTGPKGDTGATGPA 174
>SB_33702| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 479
Score = 29.9 bits (64), Expect = 2.3
Identities = 18/59 (30%), Positives = 25/59 (42%)
Frame = +1
Query: 250 PSSPRERGSGLHAPPWSFLPPVSEAAALTPRSHWSLRSRAE*VQGPSCTASRLGR*PVC 426
P E+GS L PP LPP + + P SL R++ +G S + P C
Sbjct: 195 PPKKSEQGSELGRPPSKPLPPSPRSKSPMPGQSLSLPQRSDSTEGLSVRPAPYSHLPPC 253
>SB_54008| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1940
Score = 29.5 bits (63), Expect = 3.0
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -3
Query: 169 PRHGQPLLPLFRPGLVQPEPLCL 101
P G PLLP+ P ++ P PL +
Sbjct: 1626 PATGAPLLPMLHPSMLMPHPLAM 1648
>SB_39016| Best HMM Match : Extensin_2 (HMM E-Value=0.53)
Length = 287
Score = 29.5 bits (63), Expect = 3.0
Identities = 24/59 (40%), Positives = 26/59 (44%)
Frame = +1
Query: 88 APAAADIEAPVVRAPAGTAAEVADRVAGVAAFFGPAYVLTVAAPLIFRGAGTGAPSSPR 264
AP AA A V APA AA A A A PA AAP R + +PSS R
Sbjct: 85 APLAAP--AQVAAAPAPAAAAPAPVPAAAAPAPAPAAPSAAAAPAPVRSVPSTSPSSVR 141
>SB_38206| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 323
Score = 29.5 bits (63), Expect = 3.0
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = -2
Query: 344 DRGVKAAASDTGGKKLQGGACKPDPRSRGEDGAPVPAPR 228
D+G+ D G K +G + P+ R+R G P PR
Sbjct: 141 DQGIPGVKGDVGPKGEKGDSGGPEVRTRSRQGNDKPPPR 179
>SB_34906| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 3922
Score = 29.5 bits (63), Expect = 3.0
Identities = 20/56 (35%), Positives = 29/56 (51%)
Frame = +1
Query: 178 AFFGPAYVLTVAAPLIFRGAGTGAPSSPRERGSGLHAPPWSFLPPVSEAAALTPRS 345
A FG AY A P+ +GTG P +P + + + PP +PP S+A A R+
Sbjct: 3722 AAFGSAYA---AVPV----SGTGQPPAPPDIPTAITDPPSRDVPPQSDADASETRA 3770
>SB_57906| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 398
Score = 29.5 bits (63), Expect = 3.0
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = -2
Query: 419 GQRPSREAVQLGPCTYSARDRRDQ*DRGVKAAASDTGGKKLQG 291
GQ R+ V++ C RDR+ + A++ TGGK+ +G
Sbjct: 271 GQTLGRQVVEIRVCACPGRDRKSDEKLLLGEASTTTGGKRKRG 313
>SB_43682| Best HMM Match : CcoS (HMM E-Value=4.1)
Length = 187
Score = 29.1 bits (62), Expect = 4.0
Identities = 11/26 (42%), Positives = 19/26 (73%)
Frame = +1
Query: 622 VVAL*ACTRLRRHRRYNLLVDAISNG 699
V+A+ C R RR R+Y ++D++S+G
Sbjct: 43 VLAIYVCVRNRRQRQYAAMLDSVSHG 68
>SB_36009| Best HMM Match : Collagen (HMM E-Value=0)
Length = 687
Score = 29.1 bits (62), Expect = 4.0
Identities = 22/80 (27%), Positives = 27/80 (33%)
Frame = -2
Query: 506 PTGPNQRGERTSSRGERADEGGLGRVAHTGQRPSREAVQLGPCTYSARDRRDQ*DRGVKA 327
P GP RT RG + GG G G R A + + D + + G
Sbjct: 200 PQGPQGAEGRTGRRGSLGERGGKGPQGSRGPVGPRGANGVPGSPGADGDTGEAGEHGADG 259
Query: 326 AASDTGGKKLQGGACKPDPR 267
D G L G P PR
Sbjct: 260 LKGDRGADGLPGEDGIPGPR 279
>SB_15409| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 419
Score = 29.1 bits (62), Expect = 4.0
Identities = 11/29 (37%), Positives = 14/29 (48%)
Frame = +3
Query: 87 CPRSCRHRGSGCTSPGRNSGRSG*PCRGC 173
C + CR G GC + G+ G G C C
Sbjct: 257 CGKGCRTSGKGCGTCGKGCGTCGKGCGTC 285
>SB_33549| Best HMM Match : Collagen (HMM E-Value=2e-05)
Length = 346
Score = 29.1 bits (62), Expect = 4.0
Identities = 15/43 (34%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Frame = -2
Query: 341 RGVKAAASDTGGKKLQGGACKPDPRSRGEDGAP-VPAPRKIKG 216
+G K G +QG P PR R G P +P PR + G
Sbjct: 53 QGTKGPPGSQGLSGVQGYPGAPGPRGRSPPGPPGIPGPRGLPG 95
>SB_6496| Best HMM Match : Collagen (HMM E-Value=0)
Length = 1234
Score = 28.7 bits (61), Expect = 5.3
Identities = 24/99 (24%), Positives = 42/99 (42%), Gaps = 3/99 (3%)
Frame = -2
Query: 503 TGPNQRGERTSSRGERADEGGLGRVAHTGQRPSR-EAVQLGPCTYSARDRRDQ*DRGVKA 327
+GP +G+R + G G++ H G+R R + GP + R +GV+
Sbjct: 37 SGPKGYSGEKGMQGDRGENGLPGKLGHQGKRGRRGKPGPEGPAGVQGMEGR----QGVQG 92
Query: 326 AASDTGGKKLQGGACKPDPRS-RGEDGA-PVPAPRKIKG 216
+ G G +P R +GE G+ +P ++G
Sbjct: 93 KDGEEGPPGPNGAPGRPGVRGPKGESGSRGLPGNHGVQG 131
>SB_37142| Best HMM Match : Peptidase_A22B (HMM E-Value=0)
Length = 1019
Score = 28.7 bits (61), Expect = 5.3
Identities = 21/81 (25%), Positives = 31/81 (38%)
Frame = +1
Query: 85 VAPAAADIEAPVVRAPAGTAAEVADRVAGVAAFFGPAYVLTVAAPLIFRGAGTGAPSSPR 264
V + + + PVV + AE+A +A A PA+ P GA T P
Sbjct: 880 VGMTSLETKPPVVTKLVTSTAEIATSLASTQANSTPAFTTLSNQPFTMSGAETRTPMQMP 939
Query: 265 ERGSGLHAPPWSFLPPVSEAA 327
+ G HA + + S A
Sbjct: 940 RQSEG-HATAAAVIETPSNVA 959
>SB_31260| Best HMM Match : rve (HMM E-Value=5.2e-25)
Length = 1962
Score = 28.7 bits (61), Expect = 5.3
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +1
Query: 184 FGPAYVLTVAAPLIFRG-AGTGAPSSPRERGSGLHAPPWSFLPPVS 318
+GPA+ +P G A G SPR+RGSG P ++PP S
Sbjct: 1330 YGPAFRGYAISPQRGYGPAFRGYAISPRQRGSGYAIPLGIYVPPRS 1375
>SB_33878| Best HMM Match : Attractin (HMM E-Value=5.2)
Length = 226
Score = 28.3 bits (60), Expect = 7.0
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +3
Query: 141 SGRSG*PCRGCRSFLRSRVCLNSSRSLDLSRCRH 242
SG G CR L C N +R+LD S CR+
Sbjct: 82 SGLRGGKCRNGTRTLDCSNCRNGTRTLDCSNCRN 115
>SB_5022| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 268
Score = 28.3 bits (60), Expect = 7.0
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +1
Query: 16 LGPSFAGWDGVGVDAGFFWGADLVAP 93
+GP+ G+DG G D G G D+ +P
Sbjct: 37 IGPAVCGFDGFGDDLGDEGGGDVTSP 62
>SB_45519| Best HMM Match : RNB (HMM E-Value=1.6e-35)
Length = 2748
Score = 28.3 bits (60), Expect = 7.0
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -2
Query: 548 GRRKVCANRWTCCSPTGPNQRGERTS 471
G R V A + C P PN+RG+R+S
Sbjct: 2036 GGRHVQAGDYLCIRPRRPNRRGQRSS 2061
>SB_27954| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 567
Score = 28.3 bits (60), Expect = 7.0
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = -3
Query: 508 ARLAQISAENGHLRAENGQMKVDLAELRTLVNDLVEKQCNSA 383
+RL +S NG +A NG++ +A R+ + + QC A
Sbjct: 118 SRLLGLSVSNGTSQAANGRLSSHVANGRSPLRKKIRNQCEEA 159
>SB_24368| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1045
Score = 27.9 bits (59), Expect = 9.2
Identities = 15/50 (30%), Positives = 22/50 (44%)
Frame = +3
Query: 87 CPRSCRHRGSGCTSPGRNSGRSG*PCRGCRSFLRSRVCLNSSRSLDLSRC 236
C RS + + CTS +G+ G + C L ++C S SL C
Sbjct: 630 CARSANNIYNYCTSKFLPTGKEGDVRQKCEELLSEKLCSPISESLIADTC 679
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,231,813
Number of Sequences: 59808
Number of extensions: 459710
Number of successful extensions: 3584
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 3303
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3577
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2022185256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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