Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00211
(747 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF016655-11|AAK31434.1| 162|Caenorhabditis elegans Hypothetical... 32 0.38
Z70756-10|CAI46587.1| 228|Caenorhabditis elegans Hypothetical p... 31 1.1
Z93395-7|CAH04744.1| 2389|Caenorhabditis elegans Hypothetical pr... 29 4.6
Z93395-6|CAB07708.1| 3375|Caenorhabditis elegans Hypothetical pr... 29 4.6
Z93395-4|CAB07707.1| 2295|Caenorhabditis elegans Hypothetical pr... 29 4.6
Z93395-3|CAB07706.1| 2482|Caenorhabditis elegans Hypothetical pr... 29 4.6
Z93375-9|CAH04704.1| 2389|Caenorhabditis elegans Hypothetical pr... 29 4.6
Z93375-8|CAB07569.1| 3375|Caenorhabditis elegans Hypothetical pr... 29 4.6
Z93375-7|CAB07568.1| 2295|Caenorhabditis elegans Hypothetical pr... 29 4.6
Z93375-6|CAB07567.1| 2482|Caenorhabditis elegans Hypothetical pr... 29 4.6
L13458-1|AAA28156.1| 2481|Caenorhabditis elegans basement membra... 29 4.6
AL110485-8|CAB60356.1| 434|Caenorhabditis elegans Hypothetical ... 29 4.6
Z70756-12|CAA94796.2| 180|Caenorhabditis elegans Hypothetical p... 28 6.1
U29244-6|AAY55902.1| 130|Caenorhabditis elegans Hypothetical pr... 28 6.1
AL132858-2|CAB60476.2| 821|Caenorhabditis elegans Hypothetical ... 25 6.6
Z93785-4|CAB07860.1| 330|Caenorhabditis elegans Hypothetical pr... 28 8.1
Z79758-8|CAI79179.1| 695|Caenorhabditis elegans Hypothetical pr... 28 8.1
Z79758-7|CAD98730.1| 763|Caenorhabditis elegans Hypothetical pr... 28 8.1
Z79758-6|CAD98729.1| 673|Caenorhabditis elegans Hypothetical pr... 28 8.1
Z79758-5|CAB54321.1| 687|Caenorhabditis elegans Hypothetical pr... 28 8.1
Z79758-4|CAB02133.2| 790|Caenorhabditis elegans Hypothetical pr... 28 8.1
Z79758-3|CAB02134.1| 689|Caenorhabditis elegans Hypothetical pr... 28 8.1
Z49069-2|CAA88865.1| 333|Caenorhabditis elegans Hypothetical pr... 28 8.1
AF125451-5|AAD12824.1| 1086|Caenorhabditis elegans Taf (tbp-asso... 28 8.1
AF067607-9|AAF98609.1| 460|Caenorhabditis elegans Collagen prot... 28 8.1
AF000198-7|AAB53052.1| 418|Caenorhabditis elegans Collagen prot... 28 8.1
AC024754-1|AAK71405.1| 394|Caenorhabditis elegans Hypothetical ... 28 8.1
>AF016655-11|AAK31434.1| 162|Caenorhabditis elegans Hypothetical
protein C17F4.1 protein.
Length = 162
Score = 32.3 bits (70), Expect = 0.38
Identities = 18/44 (40%), Positives = 23/44 (52%)
Frame = +3
Query: 102 RHRGSGCTSPGRNSGRSG*PCRGCRSFLRSRVCLNSSRSLDLSR 233
R RGS ++PG N R CRG F R+C +S+ L L R
Sbjct: 23 RLRGSSVSNPGSNLVRFSEFCRGSMGFHICRLCDQASQWLSLDR 66
>Z70756-10|CAI46587.1| 228|Caenorhabditis elegans Hypothetical
protein T06E4.12 protein.
Length = 228
Score = 30.7 bits (66), Expect = 1.1
Identities = 28/88 (31%), Positives = 35/88 (39%), Gaps = 4/88 (4%)
Frame = +1
Query: 88 APAAADIEAPVVRAPAGTAAEVADRVAGVAAFFGPAYVLT----VAAPLIFRGAGTGAPS 255
AP A APV+ APA A VA + + F P VL AP++ AP+
Sbjct: 94 APVFAAPPAPVLAAPAPFLAPPVPPVAPIVSAFAPRPVLAAPAFAPAPILAPRPVLAAPA 153
Query: 256 SPRERGSGLHAPPWSFLPPVSEAAALTP 339
P + L AP P A A P
Sbjct: 154 IPAFAPAPLLAPRPVLAAPAIPAFAPAP 181
Score = 30.3 bits (65), Expect = 1.5
Identities = 28/90 (31%), Positives = 39/90 (43%), Gaps = 3/90 (3%)
Frame = +1
Query: 82 LVAPAAADIEAPVVRAPAGTAAEVADRVAGVAAFFGPAYVLTVAAPLIFRGAGT-GAPSS 258
++AP A + APV+ A A A +A A P + AAP A AP +
Sbjct: 43 VLAPGVAPVAAPVLAAAPTVLAAPAPLLAPPAPLLAPPAPVLAAAPAFAAPAPVFAAPPA 102
Query: 259 P-RERGSGLHAPPWSFLPPVSE-AAALTPR 342
P + APP +PPV+ +A PR
Sbjct: 103 PVLAAPAPFLAPP---VPPVAPIVSAFAPR 129
>Z93395-7|CAH04744.1| 2389|Caenorhabditis elegans Hypothetical protein
ZC101.2f protein.
Length = 2389
Score = 28.7 bits (61), Expect = 4.6
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = +1
Query: 187 GPAYVLTVAAPLIFRGAGTGAPSSPRERGSGLHAP 291
GP ++TV PL + GAP P LH P
Sbjct: 1890 GPKLIVTVGEPLQVKCEAFGAPGDPEPEVEWLHDP 1924
>Z93395-6|CAB07708.1| 3375|Caenorhabditis elegans Hypothetical protein
ZC101.2e protein.
Length = 3375
Score = 28.7 bits (61), Expect = 4.6
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = +1
Query: 187 GPAYVLTVAAPLIFRGAGTGAPSSPRERGSGLHAP 291
GP ++TV PL + GAP P LH P
Sbjct: 1983 GPKLIVTVGEPLQVKCEAFGAPGDPEPEVEWLHDP 2017
>Z93395-4|CAB07707.1| 2295|Caenorhabditis elegans Hypothetical protein
ZC101.2c protein.
Length = 2295
Score = 28.7 bits (61), Expect = 4.6
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = +1
Query: 187 GPAYVLTVAAPLIFRGAGTGAPSSPRERGSGLHAP 291
GP ++TV PL + GAP P LH P
Sbjct: 1796 GPKLIVTVGEPLQVKCEAFGAPGDPEPEVEWLHDP 1830
>Z93395-3|CAB07706.1| 2482|Caenorhabditis elegans Hypothetical protein
ZC101.2a protein.
Length = 2482
Score = 28.7 bits (61), Expect = 4.6
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = +1
Query: 187 GPAYVLTVAAPLIFRGAGTGAPSSPRERGSGLHAP 291
GP ++TV PL + GAP P LH P
Sbjct: 1983 GPKLIVTVGEPLQVKCEAFGAPGDPEPEVEWLHDP 2017
>Z93375-9|CAH04704.1| 2389|Caenorhabditis elegans Hypothetical protein
ZC101.2f protein.
Length = 2389
Score = 28.7 bits (61), Expect = 4.6
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = +1
Query: 187 GPAYVLTVAAPLIFRGAGTGAPSSPRERGSGLHAP 291
GP ++TV PL + GAP P LH P
Sbjct: 1890 GPKLIVTVGEPLQVKCEAFGAPGDPEPEVEWLHDP 1924
>Z93375-8|CAB07569.1| 3375|Caenorhabditis elegans Hypothetical protein
ZC101.2e protein.
Length = 3375
Score = 28.7 bits (61), Expect = 4.6
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = +1
Query: 187 GPAYVLTVAAPLIFRGAGTGAPSSPRERGSGLHAP 291
GP ++TV PL + GAP P LH P
Sbjct: 1983 GPKLIVTVGEPLQVKCEAFGAPGDPEPEVEWLHDP 2017
>Z93375-7|CAB07568.1| 2295|Caenorhabditis elegans Hypothetical protein
ZC101.2c protein.
Length = 2295
Score = 28.7 bits (61), Expect = 4.6
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = +1
Query: 187 GPAYVLTVAAPLIFRGAGTGAPSSPRERGSGLHAP 291
GP ++TV PL + GAP P LH P
Sbjct: 1796 GPKLIVTVGEPLQVKCEAFGAPGDPEPEVEWLHDP 1830
>Z93375-6|CAB07567.1| 2482|Caenorhabditis elegans Hypothetical protein
ZC101.2a protein.
Length = 2482
Score = 28.7 bits (61), Expect = 4.6
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = +1
Query: 187 GPAYVLTVAAPLIFRGAGTGAPSSPRERGSGLHAP 291
GP ++TV PL + GAP P LH P
Sbjct: 1983 GPKLIVTVGEPLQVKCEAFGAPGDPEPEVEWLHDP 2017
>L13458-1|AAA28156.1| 2481|Caenorhabditis elegans basement membrane
proteoglycan protein.
Length = 2481
Score = 28.7 bits (61), Expect = 4.6
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = +1
Query: 187 GPAYVLTVAAPLIFRGAGTGAPSSPRERGSGLHAP 291
GP ++TV PL + GAP P LH P
Sbjct: 1982 GPKLIVTVGEPLQVKCEAFGAPGDPEPEVEWLHDP 2016
>AL110485-8|CAB60356.1| 434|Caenorhabditis elegans Hypothetical
protein Y46G5A.13 protein.
Length = 434
Score = 28.7 bits (61), Expect = 4.6
Identities = 17/46 (36%), Positives = 24/46 (52%)
Frame = -2
Query: 551 MGRRKVCANRWTCCSPTGPNQRGERTSSRGERADEGGLGRVAHTGQ 414
+GRR + N W + P++ GER RG+R GG GR + Q
Sbjct: 198 LGRRTIRTN-W---ATRKPDEDGERGGDRGDRRGGGGGGRDRYHNQ 239
>Z70756-12|CAA94796.2| 180|Caenorhabditis elegans Hypothetical
protein T06E4.10 protein.
Length = 180
Score = 28.3 bits (60), Expect = 6.1
Identities = 23/72 (31%), Positives = 29/72 (40%), Gaps = 1/72 (1%)
Frame = +1
Query: 127 APAGTAAEVADRVAGVAAFFGPAYVLTVAAPLIFRG-AGTGAPSSPRERGSGLHAPPWSF 303
APA AA A A PAY +AAP G A +P + AP ++
Sbjct: 39 APAVAAAPAFAAPAYAPALGAPAYAPALAAPAYAPGLAAPAFAPAPVVAAAPALAPAYAP 98
Query: 304 LPPVSEAAALTP 339
P V+ A A P
Sbjct: 99 APVVAAAPAFAP 110
>U29244-6|AAY55902.1| 130|Caenorhabditis elegans Hypothetical
protein ZK1248.20 protein.
Length = 130
Score = 28.3 bits (60), Expect = 6.1
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -2
Query: 71 QKKPASTPTPSQPAKEGPSRSRE 3
QK P + PTPS AK GP ++
Sbjct: 11 QKPPITDPTPSMLAKAGPDEKKD 33
>AL132858-2|CAB60476.2| 821|Caenorhabditis elegans Hypothetical
protein Y113G7A.3 protein.
Length = 821
Score = 25.4 bits (53), Expect(2) = 6.6
Identities = 21/58 (36%), Positives = 25/58 (43%)
Frame = +1
Query: 136 GTAAEVADRVAGVAAFFGPAYVLTVAAPLIFRGAGTGAPSSPRERGSGLHAPPWSFLP 309
GT A ++ V A G + AP GA GAP +P GSG A P LP
Sbjct: 195 GTKEVTAKQIKDVMAGGGLSQRPAAGAP----GAPAGAPGAPMAMGSG--AAPLGQLP 246
Score = 21.0 bits (42), Expect(2) = 6.6
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = +1
Query: 283 HAPPWSFLPPVSE 321
HAP FL P+SE
Sbjct: 280 HAPANKFLQPISE 292
>Z93785-4|CAB07860.1| 330|Caenorhabditis elegans Hypothetical
protein W09D10.4 protein.
Length = 330
Score = 27.9 bits (59), Expect = 8.1
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -2
Query: 323 ASDTGGKKLQGGACKPDPRSRGEDGAPVPA 234
A +G + L G+ KP P S G +P P+
Sbjct: 34 AISSGRRGLSSGSSKPKPSSEGSPSSPAPS 63
>Z79758-8|CAI79179.1| 695|Caenorhabditis elegans Hypothetical
protein W10D5.3g protein.
Length = 695
Score = 27.9 bits (59), Expect = 8.1
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +3
Query: 390 LHCFSTRSLTSVRNSAKSTFICPFSARRCPFSALI 494
L CF S + N K T+ CP + CP+ LI
Sbjct: 322 LQCFDLLSYLMM-NEKKPTWQCPVCSSNCPYDRLI 355
>Z79758-7|CAD98730.1| 763|Caenorhabditis elegans Hypothetical
protein W10D5.3f protein.
Length = 763
Score = 27.9 bits (59), Expect = 8.1
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +3
Query: 390 LHCFSTRSLTSVRNSAKSTFICPFSARRCPFSALI 494
L CF S + N K T+ CP + CP+ LI
Sbjct: 389 LQCFDLLSYLMM-NEKKPTWQCPVCSSNCPYDRLI 422
>Z79758-6|CAD98729.1| 673|Caenorhabditis elegans Hypothetical
protein W10D5.3e protein.
Length = 673
Score = 27.9 bits (59), Expect = 8.1
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +3
Query: 390 LHCFSTRSLTSVRNSAKSTFICPFSARRCPFSALI 494
L CF S + N K T+ CP + CP+ LI
Sbjct: 389 LQCFDLLSYLMM-NEKKPTWQCPVCSSNCPYDRLI 422
>Z79758-5|CAB54321.1| 687|Caenorhabditis elegans Hypothetical
protein W10D5.3d protein.
Length = 687
Score = 27.9 bits (59), Expect = 8.1
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +3
Query: 390 LHCFSTRSLTSVRNSAKSTFICPFSARRCPFSALI 494
L CF S + N K T+ CP + CP+ LI
Sbjct: 387 LQCFDLLSYLMM-NEKKPTWQCPVCSSNCPYDRLI 420
>Z79758-4|CAB02133.2| 790|Caenorhabditis elegans Hypothetical
protein W10D5.3c protein.
Length = 790
Score = 27.9 bits (59), Expect = 8.1
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +3
Query: 390 LHCFSTRSLTSVRNSAKSTFICPFSARRCPFSALI 494
L CF S + N K T+ CP + CP+ LI
Sbjct: 444 LQCFDLLSYLMM-NEKKPTWQCPVCSSNCPYDRLI 477
>Z79758-3|CAB02134.1| 689|Caenorhabditis elegans Hypothetical
protein W10D5.3a protein.
Length = 689
Score = 27.9 bits (59), Expect = 8.1
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +3
Query: 390 LHCFSTRSLTSVRNSAKSTFICPFSARRCPFSALI 494
L CF S + N K T+ CP + CP+ LI
Sbjct: 389 LQCFDLLSYLMM-NEKKPTWQCPVCSSNCPYDRLI 422
>Z49069-2|CAA88865.1| 333|Caenorhabditis elegans Hypothetical
protein K12D12.3 protein.
Length = 333
Score = 27.9 bits (59), Expect = 8.1
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = -2
Query: 506 PTGPNQRGERTSSRGERADEGGLGRVAHTG 417
P P G R RG + +GGLGR H G
Sbjct: 177 PGAPGPNG-RPGLRGMKGADGGLGRTGHDG 205
>AF125451-5|AAD12824.1| 1086|Caenorhabditis elegans Taf
(tbp-associated transcriptionfactor) family protein 2
protein.
Length = 1086
Score = 27.9 bits (59), Expect = 8.1
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = -2
Query: 320 SDTGGKKLQGGACKPDPRSRGEDGAPVPAPRKIKGAAT 207
+ T G ++ G A KP P + +GAP PAP GA+T
Sbjct: 6 ASTSGDRVNGFA-KPFP-PKPREGAPPPAPPLAPGAST 41
>AF067607-9|AAF98609.1| 460|Caenorhabditis elegans Collagen protein
102 protein.
Length = 460
Score = 27.9 bits (59), Expect = 8.1
Identities = 29/84 (34%), Positives = 33/84 (39%), Gaps = 4/84 (4%)
Frame = +1
Query: 88 APAAADIEAPVVRAPAGTAAEVADRVAGV---AAFFGPAYVLTVAAPLIFRGAGTGA-PS 255
A AAA AP APA A AG AA P AAP GAG GA P+
Sbjct: 328 AAAAAPEAAPAEAAPAAEGAGGGAEPAGAAPDAAAAAPEAAPAEAAPAA-EGAGGGAEPA 386
Query: 256 SPRERGSGLHAPPWSFLPPVSEAA 327
+ AP + P + AA
Sbjct: 387 GAAAPDAAAAAPEAAAAPEAAPAA 410
>AF000198-7|AAB53052.1| 418|Caenorhabditis elegans Collagen protein
50 protein.
Length = 418
Score = 27.9 bits (59), Expect = 8.1
Identities = 30/107 (28%), Positives = 35/107 (32%)
Frame = -2
Query: 509 SPTGPNQRGERTSSRGERADEGGLGRVAHTGQRPSREAVQLGPCTYSARDRRDQ*DRGVK 330
SP G GE +G G G P +A PC + G
Sbjct: 259 SPAGTPGPPGPPGKDGEAGPDGPAGAPGTDGA-PGPDAAYC-PCPPRTLGAGAYPEGGDA 316
Query: 329 AAASDTGGKKLQGGACKPDPRSRGEDGAPVPAPRKIKGAATVKTYAG 189
AAA+ GG GGA + AP PAP AA Y G
Sbjct: 317 AAAAPAGG--YDGGAGAAPEAAPAAAAAPQPAPAPAAAAAPAGGYQG 361
>AC024754-1|AAK71405.1| 394|Caenorhabditis elegans Hypothetical
protein Y32G9B.1 protein.
Length = 394
Score = 27.9 bits (59), Expect = 8.1
Identities = 20/59 (33%), Positives = 29/59 (49%)
Frame = +1
Query: 79 DLVAPAAADIEAPVVRAPAGTAAEVADRVAGVAAFFGPAYVLTVAAPLIFRGAGTGAPS 255
++ APA+A A V AP E+A A AF G + + +A + G GTG P+
Sbjct: 184 EIAAPASASSSAAAVSAP-----ELARPPAPTNAFDGSPF-MQIARRFLQVGTGTGTPT 236
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,645,010
Number of Sequences: 27780
Number of extensions: 322026
Number of successful extensions: 1259
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 1144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1257
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1766990064
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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