Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00211
         (747 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced prot...    25   1.00 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   3.0  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   9.3  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   9.3  

>AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 87

 Score = 24.6 bits (51), Expect = 1.00
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = -2

Query: 503 TGPNQRGERTSSRGERADEGGLGRVAHTGQRPSREAVQLGPCT 375
           TG N     +S    + DEG +G      +R  ++ +Q  PCT
Sbjct: 14  TGTNCSSGSSSDSDGQTDEGFVGDSQGFFRRSIQQKIQYRPCT 56


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +3

Query: 705 SWGPPLSGNAPVAR 746
           SW  P  GN+P+ R
Sbjct: 895 SWAAPYDGNSPIKR 908


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 8/29 (27%), Positives = 14/29 (48%)
 Frame = -1

Query: 183 ESCDTRDTVSHFCRCSGRGSYNRSLYVCS 97
           ++CD   T    C+C    ++N +   CS
Sbjct: 753 DACDCEMTCPAGCKCYNDRTWNTNAVDCS 781


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +3

Query: 489 LIWASRAAAGPPICADL 539
           L+WA  AA G PI   L
Sbjct: 309 LVWAISAAIGSPIVLGL 325


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,776
Number of Sequences: 438
Number of extensions: 3822
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23388480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)