Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00211
         (747 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing ...    31   1.1  
At3g18480.1 68416.m02348 CCAAT displacement protein-related / CD...    30   1.4  
At4g39753.1 68417.m05629 kelch repeat-containing F-box family pr...    30   1.9  
At4g32640.1 68417.m04646 sec23/sec24 transport protein-related         29   4.3  
At5g47700.1 68418.m05889 60S acidic ribosomal protein P1 (RPP1C)       28   5.7  
At2g19710.1 68415.m02303 expressed protein   contains Pfam profi...    28   5.7  
At3g54760.1 68416.m06059 dentin sialophosphoprotein-related cont...    28   7.6  
At2g23100.1 68415.m02756 DC1 domain-containing protein contains ...    28   7.6  
At2g14530.1 68415.m01626 expressed protein                             28   7.6  
At2g39570.1 68415.m04854 ACT domain-containing protein contains ...    27   10.0 

>At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing
           protein 
          Length = 809

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 18/38 (47%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +1

Query: 229 RGAGTGAPSSPRERGSGLHA-PPWSFLPPVSEAAALTP 339
           RGAG+ APSS  +R SG     P   LPP + A  L P
Sbjct: 517 RGAGSRAPSSSAKRASGSRGRRPRPPLPPPARARPLPP 554


>At3g18480.1 68416.m02348 CCAAT displacement protein-related /
           CDP-related similar to CCAAT displacement protein (CDP)
           (Cut-like 1) (Swiss-Prot:P39880) [Homo sapiens];
           contains Pfam:PF00904 Involucrin repeat
          Length = 689

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = -3

Query: 517 PAAARLAQISAENGHLRAENGQMKVDLAELRTLVNDLVEKQ 395
           PA A +A+   +   + +EN +MKV+L E RT    L  +Q
Sbjct: 125 PALASIAEQDRKLSEVESENRKMKVELEEFRTEATHLKNQQ 165


>At4g39753.1 68417.m05629 kelch repeat-containing F-box family
           protein contains F-box domain Pfam:PF00646 and Kelch
           motif Pfam:PF01344
          Length = 390

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -2

Query: 566 WSAPRMGRRKVCANRWTCCSPTGPNQR 486
           W  P   RR+VC +++ CC+    N+R
Sbjct: 332 WDKPTKPRRRVCEDKYICCALISFNKR 358


>At4g32640.1 68417.m04646 sec23/sec24 transport protein-related
          Length = 1069

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 31/108 (28%), Positives = 40/108 (37%), Gaps = 8/108 (7%)
 Frame = +1

Query: 4   SRLLLGPSFAGWDGVGVDAGFFWGADLVAPAAADIEAPVVRAPAGTAAEVADRVAGVAAF 183
           S ++ GP   G   VG   GF  G      A    +AP VR P+   A    +  G  + 
Sbjct: 186 SGMIGGPVSNGHQMVG-SGGFPRGTQFPGAAVTTPQAPYVRPPSAPYARTPPQPLGSHSL 244

Query: 184 FG-----PAYVLTVAAPLIFRGAGTGAPS---SPRERGSGLHAPPWSF 303
            G     P    ++  P  F GA  G P+    P    S   APP  F
Sbjct: 245 SGNPPLTPFTAPSMPPPATFPGAPHGRPAVSGLPYGPPSAQVAPPLGF 292


>At5g47700.1 68418.m05889 60S acidic ribosomal protein P1 (RPP1C)
          Length = 113

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 2/67 (2%)
 Frame = +1

Query: 76  ADLVAPAAADIEA--PVVRAPAGTAAEVADRVAGVAAFFGPAYVLTVAAPLIFRGAGTGA 249
           A LV  A   IE+  P++ A       V D +  V A  G    +  AAP    GA   A
Sbjct: 29  ATLVKAAGVTIESYWPMLFAKMAEKRNVTDLIMNVGAGGGGGAPVAAAAPAAGGGAAAAA 88

Query: 250 PSSPRER 270
           P++  ++
Sbjct: 89  PAAEEKK 95


>At2g19710.1 68415.m02303 expressed protein   contains Pfam profile:
           PF03398 eukaryotic protein of unknown function, DUF292
          Length = 937

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 15/44 (34%), Positives = 17/44 (38%)
 Frame = -2

Query: 509 SPTGPNQRGERTSSRGERADEGGLGRVAHTGQRPSREAVQLGPC 378
           SP      G R+SSR      G      H+  RPSR     G C
Sbjct: 242 SPENSYANGGRSSSRSNNVTSGKADDYYHSKARPSRSRPDEGEC 285


>At3g54760.1 68416.m06059 dentin sialophosphoprotein-related
           contains weak similarity to Swiss-Prot:Q9NZW4 dentin
           sialophosphoprotein precursor (Dentin phosphophoryn DPP,
           Dentin sialoprotein DSP) [Homo sapiens]
          Length = 792

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -1

Query: 564 ERTKDGETEGLRKSVDLLQPDWPKSARRTDIFAR 463
           E   D +T G+++  D+L  D P   R+T  FA+
Sbjct: 477 EAGSDVKTNGVKRKADVLSEDSPGEGRKTVSFAK 510


>At2g23100.1 68415.m02756 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 711

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 17/62 (27%), Positives = 33/62 (53%), Gaps = 7/62 (11%)
 Frame = +3

Query: 162 CRGCRSFLRSRVCLNSSRSLDLSRCRHRGTIFAS*A----RVGLARSTLELL---ASCIR 320
           C  C +++  R C+N  R + ++R +HR ++ +S        G+ R T+++     SCI+
Sbjct: 297 CLPC-NYMVHRACINLPRVIKITRHQHRLSLISSLISGDFSCGVCRKTIDISYGHYSCIK 355

Query: 321 SC 326
            C
Sbjct: 356 GC 357


>At2g14530.1 68415.m01626 expressed protein
          Length = 412

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 14/38 (36%), Positives = 17/38 (44%)
 Frame = -1

Query: 549 GETEGLRKSVDLLQPDWPKSARRTDIFARRTGR*RWTW 436
           G  EG R  VD+    W K++   DI    TG   W W
Sbjct: 207 GFKEGYRVDVDIPDSSWAKASSFHDILILNTG--HWWW 242


>At2g39570.1 68415.m04854 ACT domain-containing protein contains
           Pfam ACT domain PF01842
          Length = 411

 Score = 27.5 bits (58), Expect = 10.0
 Identities = 16/45 (35%), Positives = 19/45 (42%)
 Frame = -1

Query: 201 DIRGTEESCDTRDTVSHFCRCSGRGSYNRSLYVCSCGGNKIRPPK 67
           DI  T + CD       F     +G  N  L+V    GNKI  PK
Sbjct: 257 DILRTSKDCDVHIAYGRFSS-KVKGYRNLELFVRGTDGNKIMDPK 300


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,188,769
Number of Sequences: 28952
Number of extensions: 312779
Number of successful extensions: 1081
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1022
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1079
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1653386488
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)