Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00210
         (504 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    23   2.1  
X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Triboliu...    21   4.7  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          21   8.3  

>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 22.6 bits (46), Expect = 2.1
 Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 6/39 (15%)
 Frame = +2

Query: 62  NIQKC-GCKEN-----RMQTAGRSACQCNINIPKMPTDS 160
           N+ KC  CK++      M T  + A  C +N+P  P  S
Sbjct: 376 NVLKCVWCKQSFPSLAAMTTHMKEAKHCGVNVPVPPMQS 414


>X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Tribolium
           castaneum mRNAfor alhpa amylase 3'region. ).
          Length = 489

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = -1

Query: 168 ILKLSVGIFGIFILHWQADRPAV 100
           +L L+    G+F+ H+ ADR ++
Sbjct: 7   VLCLATLALGLFVPHFAADRNSI 29


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 20.6 bits (41), Expect = 8.3
 Identities = 6/22 (27%), Positives = 14/22 (63%)
 Frame = +2

Query: 260 DDKKKTWSLSDFDLGRPLGKGK 325
           DD+ + + ++D+DL     +G+
Sbjct: 3   DDEMEKFEITDYDLNNEFYRGR 24


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,919
Number of Sequences: 336
Number of extensions: 2301
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 11944578
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)