Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00210
         (504 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49 ...    22   3.2  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          21   5.5  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    21   7.3  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    21   7.3  

>AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49
           protein.
          Length = 134

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +1

Query: 370 RRFEGSF*KPNLGF 411
           RRF+G +  PN+G+
Sbjct: 46  RRFKGQYLMPNIGY 59


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 21.4 bits (43), Expect = 5.5
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -1

Query: 159 LSVGIFGIFILHWQAD 112
           L+VG+FG+ +L   AD
Sbjct: 8   LAVGLFGVLLLLTNAD 23


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -1

Query: 141 GIFILHWQADRPAV 100
           G  ILH+ +DRP +
Sbjct: 129 GALILHYYSDRPGL 142


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -1

Query: 141 GIFILHWQADRPAV 100
           G  ILH+ +DRP +
Sbjct: 129 GALILHYYSDRPGL 142


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 131,954
Number of Sequences: 438
Number of extensions: 2476
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13864083
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)