Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00208
         (702 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1056 + 23991894-23992028,23992139-23992258,23993366-239934...    31   0.67 
03_02_0994 - 13067254-13067379,13067483-13067521,13067824-130678...    30   2.0  
09_06_0257 + 21891523-21891578,21891911-21892421,21893021-218930...    29   3.6  
11_01_0662 - 5389746-5390548,5390727-5391368,5391624-5391659,539...    28   6.2  
09_03_0012 - 11514244-11514797,11515045-11515205,11515943-11516004     28   6.2  
07_01_0166 + 1164903-1165144,1165839-1166074,1166719-1166781,116...    28   8.3  
05_07_0071 - 27481876-27482737,27484328-27484950                       28   8.3  
02_01_0375 + 2712289-2712957                                           28   8.3  

>08_02_1056 +
           23991894-23992028,23992139-23992258,23993366-23993434,
           23993568-23993648
          Length = 134

 Score = 31.5 bits (68), Expect = 0.67
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -2

Query: 536 PVDAHCRCNNISPCITMRVRFPNIRFH 456
           P   + +C   SPC+ ++V F ++RFH
Sbjct: 68  PPSCYSKCYGCSPCVAVQVSFVHLRFH 94


>03_02_0994 -
           13067254-13067379,13067483-13067521,13067824-13067893,
           13068025-13068116,13068237-13068319,13068590-13068633,
           13068682-13068800,13068883-13068915,13069152-13069239,
           13069364-13069413
          Length = 247

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +1

Query: 1   TDRPCSQVCHLLQLCTGATTCSSTHPYTDGNCCPYTALC 117
           T++P +QVC+   +C G   CS+   + D   C    LC
Sbjct: 54  TEQPVAQVCYNCGVCMGEYFCSACKFFDDDVRCRCCLLC 92


>09_06_0257 +
           21891523-21891578,21891911-21892421,21893021-21893092,
           21893571-21893875,21894085-21894196,21894514-21894750,
           21894933-21895640
          Length = 666

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 15/53 (28%), Positives = 26/53 (49%)
 Frame = +1

Query: 166 CQIHWCWCSDSGSSWFRSWYWNSLRLPHHRYARNPSLKQQLFSYAILGFALSE 324
           C  ++  C ++GSS + +W  N+    +    RN S     F+Y +   ALS+
Sbjct: 240 CSFNFISCDNTGSSSYLTWGKNTSIFDNCDPNRNSSANPPPFNYGMFSTALSK 292


>11_01_0662 -
           5389746-5390548,5390727-5391368,5391624-5391659,
           5392314-5392377
          Length = 514

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -1

Query: 384 NSLESEEQQERHHKTEQTHSLRQ 316
           NS+   E QE+ H  E+TH LRQ
Sbjct: 62  NSIFYSESQEQKHVKEETHRLRQ 84


>09_03_0012 - 11514244-11514797,11515045-11515205,11515943-11516004
          Length = 258

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -3

Query: 316 RRNPEWRMRTTAA*GRGSWHS 254
           RR  +WR R T + GR  WH+
Sbjct: 153 RRRQQWRRRRTRSCGRTGWHN 173


>07_01_0166 +
           1164903-1165144,1165839-1166074,1166719-1166781,
           1166808-1167017,1167098-1167263,1167537-1167780,
           1167970-1168362
          Length = 517

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 17/64 (26%), Positives = 24/64 (37%)
 Frame = -3

Query: 325 PQTRRNPEWRMRTTAA*GRGSWHSDDEGAEDCSNTSSGTSYSHCRCTSTNEFGSRVNVLS 146
           P++  N E    TT     GS  +     ED  +T    +   C CT  N+  +    L 
Sbjct: 118 PKSSSNKESMKSTTNKDDSGSSKTPGSNTEDAPSTDKADAEEGCYCTIINDGHTPCAFLP 177

Query: 145 DRCG 134
             CG
Sbjct: 178 GFCG 181


>05_07_0071 - 27481876-27482737,27484328-27484950
          Length = 494

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +1

Query: 58  TCSSTHPYTDGNCCPYTALCS 120
           TC ST P++  NC   TA CS
Sbjct: 184 TCKSTIPFSLANCSSSTAACS 204


>02_01_0375 + 2712289-2712957
          Length = 222

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = +3

Query: 441 LEWTAMESNVWKPHPHSDARTDVVTPTVRVNRNAIYLI 554
           L W     N W P P SD   D     V+ +++A+ L+
Sbjct: 174 LVWWKQSGNNWWPRPDSDLGEDFEYINVKTSQDAVKLV 211


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,142,722
Number of Sequences: 37544
Number of extensions: 396248
Number of successful extensions: 1162
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1161
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)