Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00208
         (702 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58279| Best HMM Match : No HMM Matches (HMM E-Value=.)              50   2e-06
SB_30565| Best HMM Match : Metallothio (HMM E-Value=1.8)               31   0.90 
SB_41134| Best HMM Match : EGF_CA (HMM E-Value=0)                      31   1.2  
SB_48688| Best HMM Match : Ldl_recept_a (HMM E-Value=7.8e-26)          30   1.6  
SB_30577| Best HMM Match : Ldl_recept_a (HMM E-Value=2.8e-25)          30   1.6  
SB_42659| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_35286| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_20479| Best HMM Match : Collagen (HMM E-Value=1)                    29   2.8  
SB_5197| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.6  
SB_28756| Best HMM Match : C1_4 (HMM E-Value=0.095)                    29   3.6  
SB_45709| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.8  
SB_47252| Best HMM Match : TP2 (HMM E-Value=9.6)                       28   6.4  
SB_32383| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.4  
SB_7335| Best HMM Match : TSP_1 (HMM E-Value=0)                        28   6.4  
SB_41598| Best HMM Match : HLH (HMM E-Value=2.2)                       28   6.4  
SB_35576| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.4  
SB_40607| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  
SB_35202| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  
SB_30175| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  

>SB_58279| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 744

 Score = 50.0 bits (114), Expect = 2e-06
 Identities = 23/23 (100%), Positives = 23/23 (100%)
 Frame = +1

Query: 256 YARNPSLKQQLFSYAILGFALSE 324
           YARNPSLKQQLFSYAILGFALSE
Sbjct: 133 YARNPSLKQQLFSYAILGFALSE 155



 Score = 35.5 bits (78), Expect = 0.042
 Identities = 20/52 (38%), Positives = 23/52 (44%)
 Frame = +2

Query: 116 AVRSFQTTSVTKDIDSAAKFXXXXXXXXXXXXXXXXXXXXFGSLIIAMPGTP 271
           A R FQT+S  +D+DSAAKF                    FGSLII     P
Sbjct: 86  ASRGFQTSSAVQDVDSAAKFIGAGAATVGAAGSGAGIGTVFGSLIIGYARNP 137


>SB_30565| Best HMM Match : Metallothio (HMM E-Value=1.8)
          Length = 565

 Score = 31.1 bits (67), Expect = 0.90
 Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
 Frame = -3

Query: 175 EFGSRVNVLSDRCGLEGPHCR-ELCRDSSYHLCMGG 71
           E   R NVLSD  GLE   CR  LC +  +  C  G
Sbjct: 76  EASQRCNVLSDAPGLETESCRCTLCDERGFSACRSG 111


>SB_41134| Best HMM Match : EGF_CA (HMM E-Value=0)
          Length = 802

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 20/84 (23%), Positives = 34/84 (40%)
 Frame = -3

Query: 256 SDDEGAEDCSNTSSGTSYSHCRCTSTNEFGSRVNVLSDRCGLEGPHCRELCRDSSYHLCM 77
           +++ G  D    + G+    CR        ++  +  + C      C +LCRD+      
Sbjct: 274 NNNGGCRDLCINTPGSFMCQCRQGYVLANDNKTCINLNECATRKHRCEQLCRDTD----- 328

Query: 76  GGYCCKWSHQCRVAEDGRPGCRGD 5
           GGY C+     +V  DG   C G+
Sbjct: 329 GGYYCECHKGYQVGPDGM-SCIGN 351


>SB_48688| Best HMM Match : Ldl_recept_a (HMM E-Value=7.8e-26)
          Length = 351

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 22/81 (27%), Positives = 34/81 (41%)
 Frame = -3

Query: 259 HSDDEGAEDCSNTSSGTSYSHCRCTSTNEFGSRVNVLSDRCGLEGPHCRELCRDSSYHLC 80
           HSD+    +C+  S+       +C   ++F +  +  +D  G +   C   C  SS H C
Sbjct: 66  HSDER---NCACRSAEFKCPDGKCVHPSKFCNGESDCTD--GSDEWSCDNSC--SSRHAC 118

Query: 79  MGGYCCKWSHQCRVAEDGRPG 17
             G C  WS  C    D + G
Sbjct: 119 ADGTCVTWSLTCNGVSDCQDG 139


>SB_30577| Best HMM Match : Ldl_recept_a (HMM E-Value=2.8e-25)
          Length = 147

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 22/81 (27%), Positives = 34/81 (41%)
 Frame = -3

Query: 259 HSDDEGAEDCSNTSSGTSYSHCRCTSTNEFGSRVNVLSDRCGLEGPHCRELCRDSSYHLC 80
           HSD+    +C+  S+       +C   ++F +  +  +D  G +   C   C  SS H C
Sbjct: 66  HSDER---NCACRSAEFKCPDGKCVHPSKFCNGESDCTD--GSDEWSCDNSC--SSRHAC 118

Query: 79  MGGYCCKWSHQCRVAEDGRPG 17
             G C  WS  C    D + G
Sbjct: 119 ADGTCVTWSLTCNGVSDCQDG 139


>SB_42659| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 5834

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = -3

Query: 136  GLEGPHCRELCRDSSYHLCMG-GYCCKWSHQC 44
            G  G  C +LC+   +++C G G C +W+  C
Sbjct: 5392 GYWGEDCGKLCKGGIWNVCNGHGTCNRWTGDC 5423


>SB_35286| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 564

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
 Frame = -3

Query: 184 STNEFGSRVNVLS-DRCGLEGPHCRELCRDSSYHLCMGGYCCKWSHQCRVAEDGRPGCRG 8
           ST E  +R+ ++S D+C  +   CR+ C+ S   + MG  C + + + ++A    P C G
Sbjct: 8   STQEKLTRIAIVSTDKC--KPKRCRQECKKSCPVVRMGKLCIEVTPETKLAAISEPLCIG 65


>SB_20479| Best HMM Match : Collagen (HMM E-Value=1)
          Length = 1214

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 16/36 (44%), Positives = 19/36 (52%)
 Frame = -1

Query: 405 VVVFLKVNSLESEEQQERHHKTEQTHSLRQGETQNG 298
           +V  LK    ESEE  E  H  EQ H  +Q +T NG
Sbjct: 208 LVPSLKKPRCESEEDDEEEHDLEQCHD-QQKDTSNG 242


>SB_5197| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1653

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 16/40 (40%), Positives = 19/40 (47%)
 Frame = -3

Query: 271  RGSWHSDDEGAEDCSNTSSGTSYSHCRCTSTNEFGSRVNV 152
            R  W SD  G E  + T+  T  +HCRCT    FG    V
Sbjct: 1017 RQQWRSD--GCEVGNQTN--TRQTHCRCTHLTSFGGAFEV 1052


>SB_28756| Best HMM Match : C1_4 (HMM E-Value=0.095)
          Length = 201

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -3

Query: 115 RELCRDSSYHLCMGGYCCKWSHQCR 41
           R  CR    HLC+G   C+W  Q R
Sbjct: 173 RNGCRKCDVHLCVGDCFCEWHQQRR 197


>SB_45709| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1112

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 16/37 (43%), Positives = 16/37 (43%)
 Frame = -3

Query: 139 CGLEGPHCRELCRDSSYHLCMGGYCCKWSHQCRVAED 29
           C L  P  R  C D S H C  G C K S  C  A D
Sbjct: 119 CLLCSPTARMTC-DPSQHTCNNGQCIKASWLCDGASD 154


>SB_47252| Best HMM Match : TP2 (HMM E-Value=9.6)
          Length = 291

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +2

Query: 50  VRPLAAVPTHTQMVTAVPTQLSAVRSFQT 136
           +R + A PT   +VTA PT LS V ++ T
Sbjct: 120 LRIVTAYPTDLSIVTAYPTDLSKVTAYPT 148



 Score = 27.9 bits (59), Expect = 8.4
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +2

Query: 59  LAAVPTHTQMVTAVPTQLSAVRSFQT 136
           + A PT  ++VTA PT LS V ++ T
Sbjct: 143 VTAYPTDRRIVTAYPTDLSIVTAYST 168


>SB_32383| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1850

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = -3

Query: 217  SGTSYSHCRCTSTNEFGSRVNVLSDRCGLEGPHCRELCRDSS 92
            S T + H  CT  ++     + L   C  +  +CR +C D+S
Sbjct: 1764 SRTCFDHDECTQYSQVQCNEDWLKINCPKKCKYCRPVCEDTS 1805


>SB_7335| Best HMM Match : TSP_1 (HMM E-Value=0)
          Length = 2681

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = -3

Query: 217 SGTSYSHCRCTSTNEFGSRVNVLSDRCGLEGPHCRELCRDSS 92
           S T + H  CT  ++     + L   C  +  +CR +C D+S
Sbjct: 88  SRTCFDHDECTQYSQVQCNEDWLKINCPKKCKYCRPVCEDTS 129


>SB_41598| Best HMM Match : HLH (HMM E-Value=2.2)
          Length = 519

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -3

Query: 193 RCTSTNEFGSRVNVLSDRCGLEGPHCRELCRDSSY 89
           R T T +FG +VN+ S    LEG   R+   D+++
Sbjct: 16  RATFTKDFGCQVNICSASASLEGEIQRQRNTDTNF 50


>SB_35576| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1315

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 24/82 (29%), Positives = 35/82 (42%), Gaps = 15/82 (18%)
 Frame = -3

Query: 202  SHCRCTSTN---EFGSRVNVL-----SDRC--GLEGPHCRELCRDSSYHLCMGGYCCKWS 53
            ++C+C S+    E G  ++V+     +D C    +   C   C    Y  C+ G C KW 
Sbjct: 1151 ANCKCLSSKFACESGECIDVVGLCDGTDDCKDASDESRCDHKCSKDEYQ-CVSGACVKWP 1209

Query: 52   HQC---RVAEDG--RPGCRGDQ 2
              C   +  EDG   PG  G Q
Sbjct: 1210 LTCDGKKDCEDGTDEPGICGVQ 1231


>SB_40607| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 334

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +2

Query: 59  LAAVPTHTQMVTAVPTQLSAVRSFQT 136
           + A PT  ++VTA PT LS V ++ T
Sbjct: 293 VTAYPTDRRIVTAYPTDLSIVTAYST 318


>SB_35202| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 277

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +2

Query: 59  LAAVPTHTQMVTAVPTQLSAVRSFQT 136
           + A PT  ++VTA PT LS V ++ T
Sbjct: 163 VTAYPTDRRIVTAYPTDLSIVTAYST 188


>SB_30175| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 617

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -1

Query: 393 LKVNSLESEEQQERHHKTEQTHSLRQGETQN 301
           LK    E E+QQ +HHK E+     Q E Q+
Sbjct: 426 LKHQKQEEEQQQLQHHKQEEEQLKHQQEQQH 456


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,429,607
Number of Sequences: 59808
Number of extensions: 488812
Number of successful extensions: 1671
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1438
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1665
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1841633001
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)