Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00208
(702 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
D86741-2|BAA21841.1| 92|Caenorhabditis elegans ATP synthase su... 50 2e-06
D86740-2|BAA13165.1| 92|Caenorhabditis elegans ATP synthase su... 50 2e-06
AC090999-18|AAK26152.1| 116|Caenorhabditis elegans Hypothetical... 50 2e-06
Z69717-1|CAA93531.1| 1391|Caenorhabditis elegans Hypothetical pr... 29 3.2
Z75531-12|CAA99806.4| 348|Caenorhabditis elegans Hypothetical p... 29 4.3
AL032621-5|CAA21492.2| 404|Caenorhabditis elegans Hypothetical ... 29 4.3
AC024794-1|AAK68497.1| 994|Caenorhabditis elegans Hypothetical ... 24 4.7
U56966-10|AAA98722.1| 686|Caenorhabditis elegans Amyloid precur... 28 7.4
U56966-9|AAK68242.1| 684|Caenorhabditis elegans Amyloid precurs... 28 7.4
U00240-1|AAC46470.1| 680|Caenorhabditis elegans beta-amyloid pr... 28 7.4
U53149-1|AAD31546.1| 328|Caenorhabditis elegans Prion-like-(q/n... 27 9.8
>D86741-2|BAA21841.1| 92|Caenorhabditis elegans ATP synthase
subunit protein.
Length = 92
Score = 50.0 bits (114), Expect = 2e-06
Identities = 23/23 (100%), Positives = 23/23 (100%)
Frame = +1
Query: 256 YARNPSLKQQLFSYAILGFALSE 324
YARNPSLKQQLFSYAILGFALSE
Sbjct: 53 YARNPSLKQQLFSYAILGFALSE 75
Score = 29.5 bits (63), Expect = 2.4
Identities = 17/52 (32%), Positives = 20/52 (38%)
Frame = +2
Query: 116 AVRSFQTTSVTKDIDSAAKFXXXXXXXXXXXXXXXXXXXXFGSLIIAMPGTP 271
A R TT KDIDSAAK+ FG+L+I P
Sbjct: 6 AARMISTTVARKDIDSAAKYIGAGAATVGVAGSGAGIGNVFGALVIGYARNP 57
>D86740-2|BAA13165.1| 92|Caenorhabditis elegans ATP synthase
subunit protein.
Length = 92
Score = 50.0 bits (114), Expect = 2e-06
Identities = 23/23 (100%), Positives = 23/23 (100%)
Frame = +1
Query: 256 YARNPSLKQQLFSYAILGFALSE 324
YARNPSLKQQLFSYAILGFALSE
Sbjct: 53 YARNPSLKQQLFSYAILGFALSE 75
Score = 29.5 bits (63), Expect = 2.4
Identities = 17/52 (32%), Positives = 20/52 (38%)
Frame = +2
Query: 116 AVRSFQTTSVTKDIDSAAKFXXXXXXXXXXXXXXXXXXXXFGSLIIAMPGTP 271
A R TT KDIDSAAK+ FG+L+I P
Sbjct: 6 AARMISTTVARKDIDSAAKYIGAGAATVGVAGSGAGIGNVFGALVIGYARNP 57
>AC090999-18|AAK26152.1| 116|Caenorhabditis elegans Hypothetical
protein Y82E9BR.3 protein.
Length = 116
Score = 50.0 bits (114), Expect = 2e-06
Identities = 23/23 (100%), Positives = 23/23 (100%)
Frame = +1
Query: 256 YARNPSLKQQLFSYAILGFALSE 324
YARNPSLKQQLFSYAILGFALSE
Sbjct: 77 YARNPSLKQQLFSYAILGFALSE 99
Score = 29.5 bits (63), Expect = 2.4
Identities = 17/52 (32%), Positives = 20/52 (38%)
Frame = +2
Query: 116 AVRSFQTTSVTKDIDSAAKFXXXXXXXXXXXXXXXXXXXXFGSLIIAMPGTP 271
A R TT KDIDSAAK+ FG+L+I P
Sbjct: 30 AARMISTTVARKDIDSAAKYIGAGAATVGVAGSGAGIGNVFGALVIGYARNP 81
>Z69717-1|CAA93531.1| 1391|Caenorhabditis elegans Hypothetical
protein E01G6.1 protein.
Length = 1391
Score = 29.1 bits (62), Expect = 3.2
Identities = 10/30 (33%), Positives = 13/30 (43%)
Frame = +1
Query: 43 CTGATTCSSTHPYTDGNCCPYTALCSAVLP 132
C+ C + D CCPY + C A P
Sbjct: 189 CSATKPCPNGFSCNDKKCCPYASACPAGAP 218
>Z75531-12|CAA99806.4| 348|Caenorhabditis elegans Hypothetical
protein C54D10.6 protein.
Length = 348
Score = 28.7 bits (61), Expect = 4.3
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +1
Query: 412 PTYEVSVYTIWSGQPWNRMFGNLTLIVMQ 498
P + VSVY I PWN +F ++V Q
Sbjct: 29 PLFLVSVYCILKKSPWNMVFYKWLILVFQ 57
>AL032621-5|CAA21492.2| 404|Caenorhabditis elegans Hypothetical
protein Y45F3A.8 protein.
Length = 404
Score = 28.7 bits (61), Expect = 4.3
Identities = 22/68 (32%), Positives = 28/68 (41%), Gaps = 5/68 (7%)
Frame = -3
Query: 232 CSNTS-SGTSYSHCRCTSTN-EFGSRVNVLSDRCGLEGPHCR---ELCRDSSYHLCMGGY 68
CS+ + S SHC T + RV ++ C P CR +LC S Y M Y
Sbjct: 296 CSHPAFSEVMASHCSLTCGRCDEVERVEEGTEDCEDMTPDCRNYRDLCEHSRYKTLMENY 355
Query: 67 CCKWSHQC 44
C K C
Sbjct: 356 CPKACGHC 363
>AC024794-1|AAK68497.1| 994|Caenorhabditis elegans Hypothetical
protein Y48G1BM.5 protein.
Length = 994
Score = 23.8 bits (49), Expect(2) = 4.7
Identities = 14/30 (46%), Positives = 15/30 (50%)
Frame = -3
Query: 337 TDP*PQTRRNPEWRMRTTAA*GRGSWHSDD 248
T P PQT R+P TA G GS S D
Sbjct: 525 TGPAPQTGRDPNGPTTATAPQGSGSPGSVD 554
Score = 23.0 bits (47), Expect(2) = 4.7
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -3
Query: 169 GSRVNVLSDRCGLEGPHCRELCRDSS 92
GSR +V DRCG ++L RD S
Sbjct: 558 GSRRSVRQDRCGARSDQ-QDLPRDGS 582
>U56966-10|AAA98722.1| 686|Caenorhabditis elegans Amyloid
precursor-like protein1, isoform a protein.
Length = 686
Score = 27.9 bits (59), Expect = 7.4
Identities = 21/72 (29%), Positives = 30/72 (41%), Gaps = 6/72 (8%)
Frame = -3
Query: 268 GSWHSDDEGAEDCSNTS------SGTSYSHCRCTSTNEFGSRVNVLSDRCGLEGPHCREL 107
GSW +DDE C + +Y T+ E+ V++ SD C EG C+
Sbjct: 53 GSWKTDDERYATCFSGKLDILKYCRKAYPSMNITNIVEYSHEVSI-SDWCREEGSPCKWT 111
Query: 106 CRDSSYHLCMGG 71
YH C+ G
Sbjct: 112 HSVRPYH-CIDG 122
>U56966-9|AAK68242.1| 684|Caenorhabditis elegans Amyloid
precursor-like protein1, isoform b protein.
Length = 684
Score = 27.9 bits (59), Expect = 7.4
Identities = 21/72 (29%), Positives = 30/72 (41%), Gaps = 6/72 (8%)
Frame = -3
Query: 268 GSWHSDDEGAEDCSNTS------SGTSYSHCRCTSTNEFGSRVNVLSDRCGLEGPHCREL 107
GSW +DDE C + +Y T+ E+ V++ SD C EG C+
Sbjct: 53 GSWKTDDERYATCFSGKLDILKYCRKAYPSMNITNIVEYSHEVSI-SDWCREEGSPCKWT 111
Query: 106 CRDSSYHLCMGG 71
YH C+ G
Sbjct: 112 HSVRPYH-CIDG 122
>U00240-1|AAC46470.1| 680|Caenorhabditis elegans beta-amyloid
protein precursor protein.
Length = 680
Score = 27.9 bits (59), Expect = 7.4
Identities = 21/72 (29%), Positives = 30/72 (41%), Gaps = 6/72 (8%)
Frame = -3
Query: 268 GSWHSDDEGAEDCSNTS------SGTSYSHCRCTSTNEFGSRVNVLSDRCGLEGPHCREL 107
GSW +DDE C + +Y T+ E+ V++ SD C EG C+
Sbjct: 47 GSWKTDDERYATCFSGKLDILKYCRKAYPSMNITNIVEYSHEVSI-SDWCREEGSPCKWT 105
Query: 106 CRDSSYHLCMGG 71
YH C+ G
Sbjct: 106 HSVRPYH-CIDG 116
>U53149-1|AAD31546.1| 328|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 16
protein.
Length = 328
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/43 (30%), Positives = 18/43 (41%)
Frame = -3
Query: 232 CSNTSSGTSYSHCRCTSTNEFGSRVNVLSDRCGLEGPHCRELC 104
C NT TS S+C C + S + L P C++ C
Sbjct: 51 CHNTQQSTSASNCNCVLKSNSKSVPVTIKVSTKLCAPACQQSC 93
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,195,899
Number of Sequences: 27780
Number of extensions: 341972
Number of successful extensions: 1236
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1234
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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