Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00208
         (702 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   2.8  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    22   4.9  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   4.9  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 9/28 (32%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = -1

Query: 396 FLKVNSLESEEQQERHHK-TEQTHSLRQ 316
           F++ +SL  ++QQ++HH+ +   H+  Q
Sbjct: 91  FMQQHSLYLQQQQQQHHQDSSSEHASNQ 118


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -1

Query: 114 ESCVGTAVTICVWVGTAASGRTSAELQK 31
           +S  G+ VT+  W  T+ +G  S  LQK
Sbjct: 285 DSFAGSDVTVLGWGHTSFNGMLSHILQK 312


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = -1

Query: 375 ESEEQQERHHKTEQTHSLRQGETQNGV*EQLLLEGG 268
           + ++QQ+R  + ++   LR  E +  V E     GG
Sbjct: 165 QQQQQQQRQQQRQEERRLRPDEIKVEVGEDEFANGG 200


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,387
Number of Sequences: 438
Number of extensions: 4005
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21561255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)