Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00208
         (702 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g07671.1 68415.m00894 H+-transporting two-sector ATPase, C su...    40   0.001
At5g21120.1 68418.m02518 ethylene-insensitive3-like2 (EIL2) iden...    28   6.9  
At1g67120.1 68414.m07636 midasin-related similar to Midasin (MID...    28   6.9  
At5g11040.1 68418.m01290 expressed protein weak similarity to hy...    27   9.1  
At1g63910.1 68414.m07236 myb family transcription factor (MYB103...    27   9.1  

>At2g07671.1 68415.m00894 H+-transporting two-sector ATPase, C
           subunit family protein similar to ATPase subunit 9
           [Arabidopsis thaliana] GI:15215920; contains Pfam
           profile PF00137: ATP synthase subunit C
          Length = 85

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 18/25 (72%), Positives = 20/25 (80%)
 Frame = +1

Query: 250 HRYARNPSLKQQLFSYAILGFALSE 324
           H  ARNPSL +Q F YAILGFAL+E
Sbjct: 44  HSVARNPSLAKQSFGYAILGFALTE 68


>At5g21120.1 68418.m02518 ethylene-insensitive3-like2 (EIL2)
           identical to ethylene-insensitive3-like2 (EIL2)
           GI:2224929 from [Arabidopsis thaliana]
          Length = 518

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
 Frame = +1

Query: 61  CSSTHPYTDGNCC--PYTALCSAVLPD 135
           CSS  P+T+G+ C   +TALC  +  D
Sbjct: 16  CSSAPPFTEGHMCSDSHTALCDDLSSD 42


>At1g67120.1 68414.m07636 midasin-related similar to Midasin
            (MIDAS-containing protein) (Swiss-Prot:Q12019)
            [Saccharomyces cerevisiae]; similar to Midasin
            (MIDAS-containing protein) (Swiss-Prot:Q9NU22) [Homo
            sapiens]; contains Prosite PS00017: ATP/GTP-binding site
            motif A (P-loop)
          Length = 5336

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = -1

Query: 174  NLAAESMSLVTDVVWKDRTAESCVGTAVTICVWVGTAASGRTS 46
            N+A+E + L+ ++         CV     +C+ VG ++SG+TS
Sbjct: 2028 NIASEQLKLLPEIRQNLEAVAHCVQNK-WLCILVGPSSSGKTS 2069


>At5g11040.1 68418.m01290 expressed protein weak similarity to
            hypercellular protein [Aspergillus nidulans] GI:9309269
          Length = 1186

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -3

Query: 157  NVLSDRCGLEGPHCRELCRDSSYHLCMGG 71
            NVL  R G   P+    CR   +H+C+ G
Sbjct: 1155 NVLRARAGTASPNEPIFCRGPPFHVCVAG 1183


>At1g63910.1 68414.m07236 myb family transcription factor (MYB103)
           contains Pfam profile: PF00249 myb-like DNA-binding
           domain
          Length = 370

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 10/25 (40%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = +1

Query: 205 SWFRSWYWNSLRLPHHRYARN-PSL 276
           +++ SW    +R PHH Y+R+ PS+
Sbjct: 106 NYWNSWIKKKIRKPHHHYSRHQPSV 130


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,107,811
Number of Sequences: 28952
Number of extensions: 306150
Number of successful extensions: 854
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 825
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 853
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1506636208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)