Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00207
         (591 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr 1||...    30   0.22 
SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p...    30   0.29 
SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces pomb...    27   2.0  
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo...    26   3.6  
SPAC26F1.09 |gyp51||GTPase activating protein Gyp51 |Schizosacch...    26   3.6  
SPAC30.03c |tsn1|tsn, mug90|translin|Schizosaccharomyces pombe|c...    26   4.7  
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch...    26   4.7  

>SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 923

 Score = 30.3 bits (65), Expect = 0.22
 Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 13/83 (15%)
 Frame = +2

Query: 272 NSGGLHKDQAEKYR---NVLMEILKSTEQELS-----ESLKAFIEAIVNENVSLVIS--- 418
           NSG +H +Q E+Y    N+ +++L+ T+   S      S+K      +N  V L I    
Sbjct: 697 NSGTMHMEQLERYHASANIFIQMLRKTDVSNSVCADCGSVKDVTWCSINIPVVLCIECSG 756

Query: 419 --RQLLTDVSTHLALLADNVSQE 481
             R L T +S   +LL D++SQ+
Sbjct: 757 IHRSLGTHISKTRSLLLDSLSQQ 779


>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 728

 Score = 29.9 bits (64), Expect = 0.29
 Identities = 18/60 (30%), Positives = 28/60 (46%)
 Frame = +2

Query: 371 AFIEAIVNENVSLVISRQLLTDVSTHLALLADNVSQEVSHFALDVINPELFHLKNRWPVS 550
           AF+    N  ++ + S     DV T   L+  ++      +A DVI P+ FH KN   +S
Sbjct: 193 AFLNVYTNTELAYLYSMYAAEDVKT---LIHQHILVNQRVYAEDVIEPKTFHYKNGISIS 249


>SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 508

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 30/91 (32%), Positives = 49/91 (53%), Gaps = 6/91 (6%)
 Frame = +2

Query: 290 KDQAEKYRNVLMEILKSTEQELSESLK----AFIEAIVN--ENVSLVISRQLLTDVSTHL 451
           KD+  K R+ L+E LKS E   S  LK    A  E+ V+  +NVS ++  ++ + +S+ L
Sbjct: 17  KDKLLKKRDALIEDLKSPE-GASNLLKLQSFAKFESTVDALDNVSALVEGKVSSKLSSLL 75

Query: 452 ALLADNVSQEVSHFALDVINPELFHLKNRWP 544
             L+D+ S       L V +P+L +  N+ P
Sbjct: 76  EGLSDSKSS-----TLVVADPKLGNAINKLP 101


>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1336

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = -1

Query: 429 KSCLEITRLTFSLTIASMNAFNDSDNSCSVLFSISIR 319
           KS  E  +  FS+T  S+      ++ CS  F +S R
Sbjct: 26  KSSFEEKKHNFSITNKSLETLRSQESPCSTTFPVSDR 62


>SPAC26F1.09 |gyp51||GTPase activating protein Gyp51
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1031

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 10/35 (28%), Positives = 21/35 (60%)
 Frame = +2

Query: 332  LKSTEQELSESLKAFIEAIVNENVSLVISRQLLTD 436
            L   + E+ ++ +  +EAI+ EN+ +++  Q L D
Sbjct: 957  LAKQKSEIEQAFQGDMEAIIAENLEIMVESQSLED 991


>SPAC30.03c |tsn1|tsn, mug90|translin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 236

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 11/29 (37%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
 Frame = -2

Query: 476 VKHYQPAVLSVCSHLSRVALKS-LGSHFH 393
           ++ Y  AVLS+CS L+R ++ S +  ++H
Sbjct: 155 IEQYLHAVLSLCSELARQSVNSVISGNYH 183


>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1208

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 17/60 (28%), Positives = 31/60 (51%)
 Frame = +2

Query: 302 EKYRNVLMEILKSTEQELSESLKAFIEAIVNENVSLVISRQLLTDVSTHLALLADNVSQE 481
           E+ R+VL   L++ E + + SL+    ++ N+  SL    + + +   HL LLA   S +
Sbjct: 434 EEERDVLESKLQTLEDD-NNSLRLMTSSLGNQIESLRTQNREIDEEKNHLRLLASKNSDK 492


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,828,493
Number of Sequences: 5004
Number of extensions: 32708
Number of successful extensions: 94
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)