Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00207
         (591 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0026 - 5086596-5086755,5087035-5087105,5087407-5087466,508...    43   2e-04
12_02_0953 - 24736642-24736673,24737104-24737188,24737267-247373...    29   3.7  
05_05_0196 + 23152389-23152658,23153042-23153092,23153167-231532...    28   4.8  

>03_02_0026 -
           5086596-5086755,5087035-5087105,5087407-5087466,
           5087625-5087684,5088012-5088054,5088130-5088221,
           5088304-5088372,5088458-5088502,5089209-5089317,
           5089579-5089679,5089769-5089861,5089936-5089996,
           5090084-5090187,5091592-5091972
          Length = 482

 Score = 42.7 bits (96), Expect = 2e-04
 Identities = 17/28 (60%), Positives = 22/28 (78%)
 Frame = +1

Query: 508 KPRVISFEEQVASIRQHLADIYERNQNW 591
           +PRV+SFEEQV  IR+ LA++YE  Q W
Sbjct: 118 QPRVVSFEEQVVVIREKLAELYESEQQW 145



 Score = 40.3 bits (90), Expect = 0.001
 Identities = 19/46 (41%), Positives = 28/46 (60%)
 Frame = +2

Query: 383 AIVNENVSLVISRQLLTDVSTHLALLADNVSQEVSHFALDVINPEL 520
           A+V++ V LV+SRQLL   +  L  L     +EV+H+AL  I P +
Sbjct: 76  AVVSDEVPLVVSRQLLQTFAQELGRLEPEAQKEVAHYALTQIQPRV 121


>12_02_0953 - 24736642-24736673,24737104-24737188,24737267-24737386,
            24737484-24737549,24737629-24737799,24737901-24737999,
            24738075-24738186,24738282-24738343,24738412-24738483,
            24738583-24738681,24738764-24738997,24739104-24739178,
            24739299-24739386,24739478-24739638,24739734-24739841,
            24739934-24741922,24742007-24742279,24742957-24743295,
            24743449-24745038,24745166-24745241,24745333-24745412,
            24745614-24745679,24745761-24745830,24745899-24746134,
            24746149-24746319,24746915-24747097,24747176-24747241,
            24747326-24747389,24747472-24747530,24747612-24747699,
            24747799-24747891,24747956-24748116,24748215-24748307,
            24748405-24748518,24748654-24748773,24748852-24748935,
            24749016-24749171,24749518-24750154,24752874-24752929
          Length = 2815

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 23/59 (38%), Positives = 33/59 (55%)
 Frame = +2

Query: 254  DLSELRNSGGLHKDQAEKYRNVLMEILKSTEQELSESLKAFIEAIVNENVSLVISRQLL 430
            DLS L+ S  + KDQA+       E+++ TE    ESL+  +++  NE V  V  RQLL
Sbjct: 2111 DLSLLQESASVAKDQAD-------ELIQLTEA--IESLEPELDSKSNELVDAVSGRQLL 2160


>05_05_0196 +
           23152389-23152658,23153042-23153092,23153167-23153240,
           23153356-23153443,23153541-23153738,23153824-23153895,
           23154034-23154093,23154194-23154370,23154975-23155064
          Length = 359

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 32/108 (29%), Positives = 48/108 (44%), Gaps = 1/108 (0%)
 Frame = +2

Query: 224 NARQFAKCS-PDLSELRNSGGLHKDQAEKYRNVLMEILKSTEQELSESLKAFIEAIVNEN 400
           +  Q A  S P LS   N+  ++  QA  YR+V        EQE+ + LKA +EA +N  
Sbjct: 65  HTNQVAMASKPILSVFANNLIVNHLQAG-YRHVDTAAQYGIEQEVGKGLKAAMEAGINRK 123

Query: 401 VSLVISRQLLTDVSTHLALLADNVSQEVSHFALDVINPELFHLKNRWP 544
              V S+   T+++      A  +   +    LD I+  L H    WP
Sbjct: 124 DLFVTSKIWCTNLAPERVRPA--LKNTLKDLQLDYIDLYLIH----WP 165


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,956,100
Number of Sequences: 37544
Number of extensions: 182188
Number of successful extensions: 475
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 464
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 474
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1400060088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)