Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00207
(591 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_43665| Best HMM Match : Thioredoxin (HMM E-Value=0.019) 35 0.057
SB_57045| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.40
SB_26544| Best HMM Match : TEP1_N (HMM E-Value=2.7) 32 0.40
SB_14800| Best HMM Match : zf-B_box (HMM E-Value=8.2e-07) 32 0.40
SB_6523| Best HMM Match : zf-B_box (HMM E-Value=4.4e-11) 32 0.40
SB_10988| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.2
SB_45945| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_37877| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_42711| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.7
SB_34340| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.7
SB_12083| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.7
SB_47801| Best HMM Match : An_peroxidase (HMM E-Value=0) 27 8.7
>SB_43665| Best HMM Match : Thioredoxin (HMM E-Value=0.019)
Length = 415
Score = 34.7 bits (76), Expect = 0.057
Identities = 23/82 (28%), Positives = 43/82 (52%), Gaps = 3/82 (3%)
Frame = +2
Query: 290 KDQAEKYRNVLMEILKSTEQELSESLKAFIEAIVNENVSLVI---SRQLLTDVSTHLALL 460
KD AEK + + L + E++ESL+ F +EN+ +++ SR++ VS + +
Sbjct: 336 KDAAEKGEDRPITFLCARNDEVAESLREFASLPDDENILVILDIPSRRVF--VSDNDVIT 393
Query: 461 ADNVSQEVSHFALDVINPELFH 526
DN + V+++ D + L H
Sbjct: 394 TDNAREFVNNYLADKLQGRLLH 415
>SB_57045| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 362
Score = 31.9 bits (69), Expect = 0.40
Identities = 18/67 (26%), Positives = 32/67 (47%)
Frame = +2
Query: 374 FIEAIVNENVSLVISRQLLTDVSTHLALLADNVSQEVSHFALDVINPELFHLKNRWPVSD 553
F E + ++ V+ + DVS L LA+ +E + + +N L + KN W V+D
Sbjct: 293 FAEKVCDQKVNEADFLSIKKDVSAQLTALAEQHIEEPESVSGETMNLRLEYDKNYWAVAD 352
Query: 554 ST*QIST 574
++T
Sbjct: 353 EKLSVTT 359
>SB_26544| Best HMM Match : TEP1_N (HMM E-Value=2.7)
Length = 187
Score = 31.9 bits (69), Expect = 0.40
Identities = 18/67 (26%), Positives = 32/67 (47%)
Frame = +2
Query: 374 FIEAIVNENVSLVISRQLLTDVSTHLALLADNVSQEVSHFALDVINPELFHLKNRWPVSD 553
F E + ++ V+ + DVS L LA+ +E + + +N L + KN W V+D
Sbjct: 118 FAEKVCDQKVNEADFLSIKKDVSAQLTALAEQHIEEPESVSGETMNLRLEYDKNYWAVAD 177
Query: 554 ST*QIST 574
++T
Sbjct: 178 EKLSVTT 184
>SB_14800| Best HMM Match : zf-B_box (HMM E-Value=8.2e-07)
Length = 361
Score = 31.9 bits (69), Expect = 0.40
Identities = 18/67 (26%), Positives = 32/67 (47%)
Frame = +2
Query: 374 FIEAIVNENVSLVISRQLLTDVSTHLALLADNVSQEVSHFALDVINPELFHLKNRWPVSD 553
F E + ++ V+ + DVS L LA+ +E + + +N L + KN W V+D
Sbjct: 292 FAEKVCDQKVNEADFLSIKKDVSAQLTALAEQHIEEPESVSGETMNLRLEYDKNYWAVAD 351
Query: 554 ST*QIST 574
++T
Sbjct: 352 EKLSVTT 358
>SB_6523| Best HMM Match : zf-B_box (HMM E-Value=4.4e-11)
Length = 275
Score = 31.9 bits (69), Expect = 0.40
Identities = 18/67 (26%), Positives = 32/67 (47%)
Frame = +2
Query: 374 FIEAIVNENVSLVISRQLLTDVSTHLALLADNVSQEVSHFALDVINPELFHLKNRWPVSD 553
F E + ++ V+ + DVS L LA+ +E + + +N L + KN W V+D
Sbjct: 206 FAEKVCDQKVNEADFLSIKKDVSAQLTALAEQHIEEPESVSGETMNLRLEYDKNYWAVAD 265
Query: 554 ST*QIST 574
++T
Sbjct: 266 EKLSVTT 272
>SB_10988| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 366
Score = 30.3 bits (65), Expect = 1.2
Identities = 29/102 (28%), Positives = 50/102 (49%), Gaps = 1/102 (0%)
Frame = +2
Query: 284 LHKDQAEKYRNVLMEILKSTEQELSESLKAFIEAIVN-ENVSLVISRQLLTDVSTHLALL 460
L + + N +E+ ST E+S + + +++ N +L +S L +VS L
Sbjct: 42 LESNSTLEVSNSTLEVSYST-LEVSNTTQGVCNSMLEVSNSALEVSSSTL-EVSNS-TLE 98
Query: 461 ADNVSQEVSHFALDVINPELFHLKNRWPVSDST*QISTSEIK 586
N + EVS+ L+V NP L + VS ST ++S S ++
Sbjct: 99 VCNPTLEVSNSTLEVCNPTLEVSNSTLEVSSSTLEVSNSTLE 140
>SB_45945| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 78
Score = 29.1 bits (62), Expect = 2.8
Identities = 11/28 (39%), Positives = 20/28 (71%)
Frame = +2
Query: 305 KYRNVLMEILKSTEQELSESLKAFIEAI 388
KY+++L + L+ E +L+ +K FIEA+
Sbjct: 21 KYKDILEKTLRFDEPKLTRGMKVFIEAV 48
>SB_37877| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 255
Score = 28.7 bits (61), Expect = 3.8
Identities = 21/70 (30%), Positives = 30/70 (42%)
Frame = -1
Query: 522 NNSGFITSSAKCETSCETLSASSAKCVLTSVKSCLEITRLTFSLTIASMNAFNDSDNSCS 343
N + +S C S ++ S + + T S L T LTF TI + NDS
Sbjct: 98 NKARRFLNSISCRYSNASILKSELRILKTLDYSMLVPTPLTFVETILEILGHNDSRAQVK 157
Query: 342 VLFSISIRTL 313
+L SI+ L
Sbjct: 158 LLHDTSIKVL 167
>SB_42711| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 920
Score = 27.5 bits (58), Expect = 8.7
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Frame = +2
Query: 260 SELRNSGGLHKDQAEKYRNVLMEILKSTEQELS--ESLKAFIEAIVNENVSLVISRQLLT 433
SELR LH D ++Y + E+ + E+ +S E +++ E + ++S V L
Sbjct: 754 SELRQQQALHADYKQRYNQMRKELQRQYERLMSDNEQVESLPEEKLMNDMSEVPRVPTLI 813
Query: 434 DVSTHL 451
D S+ L
Sbjct: 814 DESSAL 819
>SB_34340| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 381
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/32 (34%), Positives = 21/32 (65%)
Frame = -1
Query: 522 NNSGFITSSAKCETSCETLSASSAKCVLTSVK 427
+++ ++ SSA+C S SSA+CV++S +
Sbjct: 132 SSAQYVVSSAQCVVSSAQYVVSSAQCVVSSAQ 163
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/32 (34%), Positives = 21/32 (65%)
Frame = -1
Query: 522 NNSGFITSSAKCETSCETLSASSAKCVLTSVK 427
+++ ++ SSA+C S SSA+CV++S +
Sbjct: 146 SSAQYVVSSAQCVVSSAQYVVSSAQCVVSSAQ 177
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/32 (34%), Positives = 21/32 (65%)
Frame = -1
Query: 522 NNSGFITSSAKCETSCETLSASSAKCVLTSVK 427
+++ ++ SSA+C S SSA+CV++S +
Sbjct: 314 SSAHYVVSSAQCVVSSAQYVVSSAQCVVSSAQ 345
>SB_12083| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1671
Score = 27.5 bits (58), Expect = 8.7
Identities = 17/40 (42%), Positives = 23/40 (57%)
Frame = +2
Query: 281 GLHKDQAEKYRNVLMEILKSTEQELSESLKAFIEAIVNEN 400
G H D+ +N EIL +T +L E+LK I+ I NEN
Sbjct: 1074 GKHIDRIITLQN---EILDATNPKLREALKKKIDKIKNEN 1110
>SB_47801| Best HMM Match : An_peroxidase (HMM E-Value=0)
Length = 1263
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/49 (24%), Positives = 27/49 (55%)
Frame = +2
Query: 413 ISRQLLTDVSTHLALLADNVSQEVSHFALDVINPELFHLKNRWPVSDST 559
+ R++L ++ + A A + +HF L + + F ++ WPV+++T
Sbjct: 564 LEREILREIRSVSAFSAQG--ETTAHFGLGAESADTFTVRVHWPVTNNT 610
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,204,139
Number of Sequences: 59808
Number of extensions: 234931
Number of successful extensions: 592
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 552
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 591
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1434459094
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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