Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00207
         (591 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23452-4|ABE73334.1| 1316|Caenorhabditis elegans Hypothetical pr...    37   0.012
U23452-3|AAU87818.1| 1982|Caenorhabditis elegans Hypothetical pr...    37   0.012
U23452-2|AAU87819.1| 1987|Caenorhabditis elegans Hypothetical pr...    37   0.012
Z73424-4|CAA97778.2|  954|Caenorhabditis elegans Hypothetical pr...    32   0.35 
Z92831-4|CAJ58497.1|  447|Caenorhabditis elegans Hypothetical pr...    30   1.1  
Z54218-1|CAA90954.1|  315|Caenorhabditis elegans Hypothetical pr...    29   3.3  
U53141-8|AAA96110.3|  572|Caenorhabditis elegans Prion-like-(q/n...    29   3.3  
AC024826-18|AAF60803.1|  412|Caenorhabditis elegans Cop-9 signal...    29   3.3  
U28741-4|AAA68328.1|  747|Caenorhabditis elegans Hypothetical pr...    28   4.3  
AF022983-1|AAB69946.2|  324|Caenorhabditis elegans Serpentine re...    27   7.5  

>U23452-4|ABE73334.1| 1316|Caenorhabditis elegans Hypothetical
           protein R07G3.3c protein.
          Length = 1316

 Score = 36.7 bits (81), Expect = 0.012
 Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 6/81 (7%)
 Frame = +2

Query: 257 LSELRNSGGLHKDQAEKYRNVLME---ILKSTEQELSESLKAFIEAIVNENVSLVISRQL 427
           + E +N+  L KDQ E   NVL+E   +L+  + E+     A  +AI + +  L  +R  
Sbjct: 274 MEESKNAADLFKDQLEAQENVLVEVRKVLQEHQDEMERENLAHADAIKHRDEELAQTRAE 333

Query: 428 LTDVSTHLALLAD---NVSQE 481
           L  V+  +  ++D   NVS+E
Sbjct: 334 LVKVTEMMKSMSDVKLNVSEE 354


>U23452-3|AAU87818.1| 1982|Caenorhabditis elegans Hypothetical
           protein R07G3.3a protein.
          Length = 1982

 Score = 36.7 bits (81), Expect = 0.012
 Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 6/81 (7%)
 Frame = +2

Query: 257 LSELRNSGGLHKDQAEKYRNVLME---ILKSTEQELSESLKAFIEAIVNENVSLVISRQL 427
           + E +N+  L KDQ E   NVL+E   +L+  + E+     A  +AI + +  L  +R  
Sbjct: 274 MEESKNAADLFKDQLEAQENVLVEVRKVLQEHQDEMERENLAHADAIKHRDEELAQTRAE 333

Query: 428 LTDVSTHLALLAD---NVSQE 481
           L  V+  +  ++D   NVS+E
Sbjct: 334 LVKVTEMMKSMSDVKLNVSEE 354


>U23452-2|AAU87819.1| 1987|Caenorhabditis elegans Hypothetical
           protein R07G3.3b protein.
          Length = 1987

 Score = 36.7 bits (81), Expect = 0.012
 Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 6/81 (7%)
 Frame = +2

Query: 257 LSELRNSGGLHKDQAEKYRNVLME---ILKSTEQELSESLKAFIEAIVNENVSLVISRQL 427
           + E +N+  L KDQ E   NVL+E   +L+  + E+     A  +AI + +  L  +R  
Sbjct: 274 MEESKNAADLFKDQLEAQENVLVEVRKVLQEHQDEMERENLAHADAIKHRDEELAQTRAE 333

Query: 428 LTDVSTHLALLAD---NVSQE 481
           L  V+  +  ++D   NVS+E
Sbjct: 334 LVKVTEMMKSMSDVKLNVSEE 354


>Z73424-4|CAA97778.2|  954|Caenorhabditis elegans Hypothetical
           protein C44B9.1 protein.
          Length = 954

 Score = 31.9 bits (69), Expect = 0.35
 Identities = 18/43 (41%), Positives = 27/43 (62%), Gaps = 2/43 (4%)
 Frame = +2

Query: 299 AEKYRNVLM--EILKSTEQELSESLKAFIEAIVNENVSLVISR 421
           +EKYR V    E+L+ TEQ   + L AF+EAI     ++V+S+
Sbjct: 273 SEKYRFVYTAYEMLEKTEQVAEKLLTAFVEAIETTTSAVVLSK 315


>Z92831-4|CAJ58497.1|  447|Caenorhabditis elegans Hypothetical
           protein F22G12.7 protein.
          Length = 447

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 24/93 (25%), Positives = 46/93 (49%)
 Frame = +2

Query: 233 QFAKCSPDLSELRNSGGLHKDQAEKYRNVLMEILKSTEQELSESLKAFIEAIVNENVSLV 412
           + A+ S D+S+L+   G++  + +  +NV +EI  S   +    +  F+++  NE +S  
Sbjct: 193 KLAEASEDISKLQ---GINCIEDKINKNVAVEIF-SEIADARNCMNTFVDSFENEKISFK 248

Query: 413 ISRQLLTDVSTHLALLADNVSQEVSHFALDVIN 511
             +     +   +ALL   V  E  + A +VIN
Sbjct: 249 TLQVFRRRIEVLIALLDFLVEIERKNHAANVIN 281


>Z54218-1|CAA90954.1|  315|Caenorhabditis elegans Hypothetical
           protein F37B12.1 protein.
          Length = 315

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
 Frame = -1

Query: 498 SAKCETSCETLSASSAKCVLTSVKSC--LEITRLTFSLTIASMNAFNDSDNSCSVLFSIS 325
           SAKCE  C +   ++ K  LT  KSC  ++ TRL F L + +   F+ +  S S      
Sbjct: 200 SAKCEAQCTSTVTTAPK--LTKAKSCDSIKRTRLYF-LVVYTCRFFSPTATSHSSHSLSF 256

Query: 324 IRTLRYF 304
           + T R F
Sbjct: 257 LGTCRVF 263


>U53141-8|AAA96110.3|  572|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 13
           protein.
          Length = 572

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = -1

Query: 498 SAKCETSCETLSASSAKCVLTSVKSC 421
           +A C+ SC++  +S+A+CV   + SC
Sbjct: 338 AAACQPSCQSSCSSNAQCVQACLPSC 363


>AC024826-18|AAF60803.1|  412|Caenorhabditis elegans Cop-9
           signalosome subunit protein 4 protein.
          Length = 412

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = +1

Query: 508 KPRVISFEEQVASIRQHLADIYER 579
           K R IS+E+QV  +R  LA +YE+
Sbjct: 100 KTRTISYEDQVCILRLMLASLYEK 123


>U28741-4|AAA68328.1|  747|Caenorhabditis elegans Hypothetical
           protein F35D2.4 protein.
          Length = 747

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 12/32 (37%), Positives = 22/32 (68%)
 Frame = -1

Query: 522 NNSGFITSSAKCETSCETLSASSAKCVLTSVK 427
           N++G+ T   KCETSC  ++++++  V T +K
Sbjct: 110 NDNGYCT---KCETSCSEMNSTNSDQVYTRIK 138


>AF022983-1|AAB69946.2|  324|Caenorhabditis elegans Serpentine
           receptor, class ab (class a-like) protein 16 protein.
          Length = 324

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
 Frame = +1

Query: 118 IIIYFNHRI--NLTKIYLP-ADYH*LILLRYIQPIRKLKCPSICKVFARLKRVEK 273
           I+IYF   I  +L   +L  ADY+ L  + Y  PI  L  P+    F++ +RVE+
Sbjct: 246 ILIYFTMGIPFHLVGKHLDHADYYALFEVIYFVPIYSLIMPAYIYQFSKKQRVER 300


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,119,255
Number of Sequences: 27780
Number of extensions: 188352
Number of successful extensions: 666
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 633
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 666
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1247656244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)