Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00207
(591 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g42970.1 68418.m05241 COP9 signalosome complex subunit 4 / CS... 45 3e-05
At3g13150.1 68416.m01645 pentatricopeptide (PPR) repeat-containi... 29 1.8
At4g28580.1 68417.m04088 magnesium transporter CorA-like family ... 29 3.1
At5g38090.1 68418.m04589 hypothetical protein 28 4.1
At3g02260.1 68416.m00207 auxin transport protein (BIG) nearly id... 28 4.1
At2g29100.1 68415.m03537 glutamate receptor family protein (GLR2... 28 5.4
At1g12600.1 68414.m01463 hypothetical protein 28 5.4
At4g38180.1 68417.m05390 far-red impaired responsive protein, pu... 27 7.1
At3g02690.1 68416.m00260 integral membrane family protein simila... 27 7.1
At5g64270.1 68418.m08074 splicing factor, putative similar to sp... 27 9.4
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)... 27 9.4
>At5g42970.1 68418.m05241 COP9 signalosome complex subunit 4 / CSN
complex subunit 4 (CSN4) (COP8) (FUS4) FUSCA4, COP8,
CSN4; identical to CSN complex subunit 4 [Arabidopsis
thaliana] GI:18056659, COP8 [Arabidopsis thaliana]
GI:5802627; contains Pfam profile PF01399: PCI domain;
identical to cDNA CSN complex subunit 4 (CSN4)
GI:18056658
Length = 397
Score = 45.2 bits (102), Expect = 3e-05
Identities = 25/80 (31%), Positives = 46/80 (57%)
Frame = +2
Query: 281 GLHKDQAEKYRNVLMEILKSTEQELSESLKAFIEAIVNENVSLVISRQLLTDVSTHLALL 460
G + + E+Y+ +L +L S + L ++ + FI+ I++++V LV+SRQLL + L L
Sbjct: 12 GDQRQKIEQYKLILSSVLSSND--LLQAQR-FIDHILSDDVPLVVSRQLLQSFAQELGRL 68
Query: 461 ADNVSQEVSHFALDVINPEL 520
+E++ F L I P +
Sbjct: 69 EPETQKEIAQFTLTQIQPRV 88
Score = 39.5 bits (88), Expect = 0.002
Identities = 16/28 (57%), Positives = 20/28 (71%)
Frame = +1
Query: 508 KPRVISFEEQVASIRQHLADIYERNQNW 591
+PRV+SFEEQ IR+ LA +YE Q W
Sbjct: 85 QPRVVSFEEQALVIREKLAGLYESEQEW 112
>At3g13150.1 68416.m01645 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 551
Score = 29.5 bits (63), Expect = 1.8
Identities = 18/51 (35%), Positives = 31/51 (60%)
Frame = -1
Query: 501 SSAKCETSCETLSASSAKCVLTSVKSCLEITRLTFSLTIASMNAFNDSDNS 349
S+ K +T+ +S SSAK T V S + + SL++A+ ++ +DSD+S
Sbjct: 407 SAGKKKTTSSPVS-SSAKTTSTPVSSSPDTSSFLLSLSLAADSSSSDSDSS 456
>At4g28580.1 68417.m04088 magnesium transporter CorA-like family
protein (MRS2-6) weak similarity to SP|Q01926 RNA
splicing protein MRS2, mitochondrial precursor
{Saccharomyces cerevisiae}; contains Pfam profile
PF01544: CorA-like Mg2+ transporter protein
Length = 408
Score = 28.7 bits (61), Expect = 3.1
Identities = 21/71 (29%), Positives = 31/71 (43%)
Frame = +2
Query: 365 LKAFIEAIVNENVSLVISRQLLTDVSTHLALLADNVSQEVSHFALDVINPELFHLKNRWP 544
L + + NEN+ + R L T + THL V E+ HF D + E +L +W
Sbjct: 201 LDELTKKVSNENLKDL--RSLKTSL-THLLARVQKVRDEIEHFLDDKEDMEDLYLTRKWI 257
Query: 545 VSDST*QISTS 577
+ T S S
Sbjct: 258 QNQQTEAASNS 268
>At5g38090.1 68418.m04589 hypothetical protein
Length = 146
Score = 28.3 bits (60), Expect = 4.1
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = +2
Query: 323 MEILKSTEQELSESLKAFIEAIVNENVSLVISRQLLTDVSTHLAL 457
M+ K E++ES A++ + N+ VI LL +ST LAL
Sbjct: 53 MKFTKIPFNEVAESWIAYVMGRICNNIGFVIFLHLLYCISTRLAL 97
>At3g02260.1 68416.m00207 auxin transport protein (BIG) nearly
identical to auxin transport protein; BIG [Arabidopsis
thaliana] GI:21779966; contains Pfam profiles PF02207:
Putative zinc finger in N-recognin, PF00569: Zinc finger
ZZ type
Length = 5098
Score = 28.3 bits (60), Expect = 4.1
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -2
Query: 302 QLDLYANHPNFSTRLSLANTLQIDGHF 222
Q +L ANHPN +L N ++ DG++
Sbjct: 3303 QNELIANHPNSRIYSTLGNLVEFDGYY 3329
>At2g29100.1 68415.m03537 glutamate receptor family protein (GLR2.9)
plant glutamate receptor family, PMID:11379626
Length = 940
Score = 27.9 bits (59), Expect = 5.4
Identities = 10/15 (66%), Positives = 13/15 (86%)
Frame = -2
Query: 296 DLYANHPNFSTRLSL 252
D YA+HPN+ TRL+L
Sbjct: 56 DFYADHPNYLTRLTL 70
>At1g12600.1 68414.m01463 hypothetical protein
Length = 349
Score = 27.9 bits (59), Expect = 5.4
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = -3
Query: 310 ILFSLIFMQTTRISQLA*VWRTLCKLTGILI 218
+ +LI+M R Q+ W+T KL+G+L+
Sbjct: 66 VYIALIYMYGFRTKQMVNPWKTYVKLSGVLM 96
>At4g38180.1 68417.m05390 far-red impaired responsive protein,
putative similar to far-red impaired response protein
FAR1 [Arabidopsis thaliana] gi|5764395|gb|AAD51282;
contains Pfam:PF03101 domain: FAR1 family and PF04434:
SWIM zinc finger
Length = 788
Score = 27.5 bits (58), Expect = 7.1
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +2
Query: 257 LSELRNSGGLHKDQAEKYRNVLMEILKSTE-QELSESLK 370
+++LRN L + E YR L+ +LK E Q+L S+K
Sbjct: 738 INQLRNELELANRKCEAYRTNLLSVLKEMEDQKLQVSIK 776
>At3g02690.1 68416.m00260 integral membrane family protein similar
to PecM protein (GI:5852331) {Vogesella indigofera} and
PecM protein (SP:P42194) [Erwinia chrysanthemi]
Length = 417
Score = 27.5 bits (58), Expect = 7.1
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = -1
Query: 465 SASSAKCVLTSVKSCLEITRLT 400
S+SS+ C S SCL ITR T
Sbjct: 12 SSSSSSCFFASPNSCLSITRRT 33
>At5g64270.1 68418.m08074 splicing factor, putative similar to
splicing factor 3B subunit 1 (Spliceosome associated
protein 155) (SAP 155) (SF3b155) (Pre-mRNA splicing
factor SF3b 155 kDa subunit) (146 kDa nuclear protein)
SP:O57683 from [Xenopus laevis]
Length = 1269
Score = 27.1 bits (57), Expect = 9.4
Identities = 14/55 (25%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = +2
Query: 290 KDQAEKYRNVLMEILKSTEQELSES-LKAFIEAIVNENVSLVISRQLLTDVSTHL 451
KD++E+YR ++ME + L S + A +E ++ + + Q D + L
Sbjct: 822 KDESEQYRRMVMETIDKVVTNLGASDIDARLEELLIDGILYAFQEQTSDDANVML 876
>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
Length = 626
Score = 27.1 bits (57), Expect = 9.4
Identities = 14/60 (23%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Frame = +2
Query: 323 MEILKSTEQELSESLKAFIEAIVNENVSLVISRQLLTDVSTH-LALLADNVSQEVSHFAL 499
+ ++ E E E +K+F+ + N+++ ++ LLT+ + L A++V++ V+ A+
Sbjct: 437 VSLISPDEMEGFEDIKSFLASDKNKDIDIITPFPLLTENAVESLRYRAEDVAKSVTKIAV 496
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,239,554
Number of Sequences: 28952
Number of extensions: 159817
Number of successful extensions: 477
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 438
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 477
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1171109464
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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