Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00206
         (742 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces pomb...    30   0.40 
SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity fac...    26   4.9  
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc...    25   8.6  

>SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 923

 Score = 29.9 bits (64), Expect = 0.40
 Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = +1

Query: 586 ERQESWLQNHPFAKCANMDLPVYQRVI-IQILAFIAAHTFGIRLIYP 723
           +R+E WL   P+       L +  R++     AF  +HT G  ++YP
Sbjct: 664 KRREPWLYGEPYTSLVRELLRIRYRLLPTWYTAFYNSHTHGFPILYP 710


>SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity factor
           complex subunit, Fip1 homolog |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 344

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +1

Query: 331 PIHNPTWLSFNGRSKNFNA 387
           P HNPT    NG S N+NA
Sbjct: 283 PTHNPTSSYGNGASTNYNA 301


>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
           orphan|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 776

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 13/37 (35%), Positives = 16/37 (43%)
 Frame = +1

Query: 490 LSHGRQDAYLKAIRKYDFDFSAWPVTFTADPEERQES 600
           L H +Q   L     Y F F   P  F   PEE +E+
Sbjct: 620 LDHNKQTNPLPYHIVYMFSFETSPTVFQTSPEEDKEN 656


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,142,003
Number of Sequences: 5004
Number of extensions: 66293
Number of successful extensions: 141
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)